Difference between revisions of "TSS:Hg 102562.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000336067.10:0 ENST00000373284. | + | |all_trans=ENST00000336067.10:0 ENST00000373284.10:0 ENST00000373281.8:0 ENST00000463577.2:0 ENST00000472723.1:0 ENST00000496460.5:0 NM_001252023:0 NM_130459:0 NM_001085347:0 NM_001252021:0 NM_001134430:0 NM_001134431:0 NM_001252018:0 AY358180:0 BC062340:0 AK075520:0 AK055034:0 AK092388:0 LF205650:-6 MA441227:-6 AK027677:9 BC100907:9 BC100908:9 BC100909:9 BC100910:9 ENST00000463256.5:12 ENST00000493439.1:12 BC080527:12 BC156122:17 BC156918:17 BC160144:17 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-14 |
|end=127735330 | |end=127735330 | ||
|end_of_center_position=127735309 | |end_of_center_position=127735309 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:11996 | |hgnc_mgi_id=HGNC:11996 | ||
|nearest_ensembl=ENSG00000160404 | |nearest_ensembl=ENSG00000160404 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001134430 |
|nearest_refseq=NM_130459 | |nearest_refseq=NM_130459 | ||
|nearest_unigene=Hs.444106 | |nearest_unigene=Hs.444106 | ||
| − | |num_trans= | + | |num_trans=31 |
|species=human | |species=human | ||
|start=127735286 | |start=127735286 | ||
|start_of_center_position=127735308 | |start_of_center_position=127735308 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000336067.10 ENST00000373284. | + | |transcript_name=ENST00000336067.10 ENST00000373284.10 ENST00000373281.8 ENST00000463577.2 ENST00000472723.1 ENST00000496460.5 NM_001252023 NM_130459 NM_001085347 NM_001252021 NM_001134430 NM_001134431 NM_001252018 AY358180 BC062340 AK075520 AK055034 AK092388 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102562.1 | |tss_id=hg_102562.1 | ||
Revision as of 17:06, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 127735308 |
|---|---|
| End of the center position in the TSS region: | 127735309 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000336067.10 ENST00000373284.10 ENST00000373281.8 ENST00000463577.2 ENST00000472723.1 ENST00000496460.5 NM_001252023 NM_130459 NM_001085347 NM_001252021 NM_001134430 NM_001134431 NM_001252018 AY358180 BC062340 AK075520 AK055034 AK092388 |
|---|---|
| Distance: | 0 |
| Num_trans: | 31 |
| All_trans: | ENST00000336067.10:0 ENST00000373284.10:0 ENST00000373281.8:0 ENST00000463577.2:0 ENST00000472723.1:0 ENST00000496460.5:0 NM_001252023:0 NM_130459:0 NM_001085347:0 NM_001252021:0 NM_001134430:0 NM_001134431:0 NM_001252018:0 AY358180:0 BC062340:0 AK075520:0 AK055034:0 AK092388:0 LF205650:-6 MA441227:-6 AK027677:9 BC100907:9 BC100908:9 BC100909:9 BC100910:9 ENST00000463256.5:12 ENST00000493439.1:12 BC080527:12 BC156122:17 BC156918:17 BC160144:17 |
TATA-Box annotation
| Distance to TSS: | -14 |
|---|---|
| Nearest PromoterID: | NM_001134430 |
| Entrez ID: | 27433 |
| Nearest Unigene: | Hs.444106 |
| Nearest Refseq: | NM_130459 |
| Nearest Ensembl: | ENSG00000160404 |
| Gene Name: | torsin family 2 member A |
| Gene Alias: | TORP1 |
| Gene Description: | torsin family 2 member A |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
