Difference between revisions of "TSS:Hg 102564.1"
From referenceTSS
| Line 3: | Line 3: | ||
|PRO34088= | |PRO34088= | ||
|SHEP1= | |SHEP1= | ||
| − | |all_trans=ENST00000629203.2 | + | |all_trans=ENST00000629203.2:-35 AK291393:-35 NM_001142534:-43 ENST00000420366.5:-65 NM_001142533:-65 AK056068:-65 ENST00000414380.1:199 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| Line 12: | Line 12: | ||
|entrez_id=10044 | |entrez_id=10044 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
| − | |gene_alias=CHAT | + | |gene_alias=CHAT{{!}}NSP3{{!}}PRO34088{{!}}SHEP1 |
|gene_description=SH2 domain containing 3C | |gene_description=SH2 domain containing 3C | ||
|gene_id=10044 | |gene_id=10044 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_005489 | |nearest_refseq=NM_005489 | ||
|nearest_unigene=Hs.306412 | |nearest_unigene=Hs.306412 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=127755228 | |start=127755228 | ||
|start_of_center_position=127755233 | |start_of_center_position=127755233 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000629203.2 | + | |transcript_name=ENST00000629203.2 AK291393 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102564.1 | |tss_id=hg_102564.1 | ||
Revision as of 17:06, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 127755233 |
|---|---|
| End of the center position in the TSS region: | 127755234 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000629203.2 AK291393 |
|---|---|
| Distance: | -35 |
| Num_trans: | 7 |
| All_trans: | ENST00000629203.2:-35 AK291393:-35 NM_001142534:-43 ENST00000420366.5:-65 NM_001142533:-65 AK056068:-65 ENST00000414380.1:199 |
TATA-Box annotation
| Distance to TSS: | 48 |
|---|---|
| Nearest PromoterID: | NM_001142534 |
| Entrez ID: | 10044 |
| Nearest Unigene: | Hs.306412 |
| Nearest Refseq: | NM_005489 |
| Nearest Ensembl: | ENSG00000095370 |
| Gene Name: | SH2 domain containing 3C |
| Gene Alias: | CHAT|NSP3|PRO34088|SHEP1 |
| Gene Description: | SH2 domain containing 3C |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
