Difference between revisions of "TSS:Hg 102567.1"
From referenceTSS
| Line 3: | Line 3: | ||
|PRO34088= | |PRO34088= | ||
|SHEP1= | |SHEP1= | ||
| − | |all_trans=ENST00000464239.5 | + | |all_trans=ENST00000464239.5:15 AY358089:-63 ENST00000488685.1:-64 ENST00000440630.5:-193 ENST00000429553.5:-195 NM_001142532:-195 AK311510:-195 NM_001142531:-217 AK294386:-217 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| Line 12: | Line 12: | ||
|entrez_id=10044 | |entrez_id=10044 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
| − | |gene_alias=CHAT | + | |gene_alias=CHAT{{!}}NSP3{{!}}PRO34088{{!}}SHEP1 |
|gene_description=SH2 domain containing 3C | |gene_description=SH2 domain containing 3C | ||
|gene_id=10044 | |gene_id=10044 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_005489 | |nearest_refseq=NM_005489 | ||
|nearest_unigene=Hs.306412 | |nearest_unigene=Hs.306412 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=127762202 | |start=127762202 | ||
|start_of_center_position=127762212 | |start_of_center_position=127762212 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000464239.5 | + | |transcript_name=ENST00000464239.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102567.1 | |tss_id=hg_102567.1 | ||
Revision as of 17:06, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 127762212 |
|---|---|
| End of the center position in the TSS region: | 127762213 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000464239.5 |
|---|---|
| Distance: | 15 |
| Num_trans: | 9 |
| All_trans: | ENST00000464239.5:15 AY358089:-63 ENST00000488685.1:-64 ENST00000440630.5:-193 ENST00000429553.5:-195 NM_001142532:-195 AK311510:-195 NM_001142531:-217 AK294386:-217 |
TATA-Box annotation
| Distance to TSS: | 205 |
|---|---|
| Nearest PromoterID: | NM_001142532 |
| Entrez ID: | 10044 |
| Nearest Unigene: | Hs.306412 |
| Nearest Refseq: | NM_005489 |
| Nearest Ensembl: | ENSG00000095370 |
| Gene Name: | SH2 domain containing 3C |
| Gene Alias: | CHAT|NSP3|PRO34088|SHEP1 |
| Gene Description: | SH2 domain containing 3C |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
