Difference between revisions of "TSS:Hg 102571.1"
From referenceTSS
| Line 3: | Line 3: | ||
|PRO34088= | |PRO34088= | ||
|SHEP1= | |SHEP1= | ||
| − | |all_trans=ENST00000373276.7:-17 NM_001252334:-17 NM_005489: | + | |all_trans=ENST00000373276.7:-17 NM_001252334:-17 NM_005489:43 BX647905:43 AK292041:46 AF124251:65 AY358440:67 ENST00000373277.8:-86 BC027962:97 JF432256:106 KJ898142:106 CU693348:106 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| Line 12: | Line 12: | ||
|entrez_id=10044 | |entrez_id=10044 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
| − | |gene_alias=CHAT | + | |gene_alias=CHAT{{!}}NSP3{{!}}PRO34088{{!}}SHEP1 |
|gene_description=SH2 domain containing 3C | |gene_description=SH2 domain containing 3C | ||
|gene_id=10044 | |gene_id=10044 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_005489 | |nearest_refseq=NM_005489 | ||
|nearest_unigene=Hs.306412 | |nearest_unigene=Hs.306412 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=127771336 | |start=127771336 | ||
|start_of_center_position=127771344 | |start_of_center_position=127771344 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000373276.7 NM_001252334 | + | |transcript_name=ENST00000373276.7 NM_001252334 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102571.1 | |tss_id=hg_102571.1 | ||
Revision as of 17:06, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 127771344 |
|---|---|
| End of the center position in the TSS region: | 127771345 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000373276.7 NM_001252334 |
|---|---|
| Distance: | -17 |
| Num_trans: | 12 |
| All_trans: | ENST00000373276.7:-17 NM_001252334:-17 NM_005489:43 BX647905:43 AK292041:46 AF124251:65 AY358440:67 ENST00000373277.8:-86 BC027962:97 JF432256:106 KJ898142:106 CU693348:106 |
TATA-Box annotation
| Distance to TSS: | 25 |
|---|---|
| Nearest PromoterID: | NM_001252334 |
| Entrez ID: | 10044 |
| Nearest Unigene: | Hs.306412 |
| Nearest Refseq: | NM_005489 |
| Nearest Ensembl: | ENSG00000095370 |
| Gene Name: | SH2 domain containing 3C |
| Gene Alias: | CHAT|NSP3|PRO34088|SHEP1 |
| Gene Description: | SH2 domain containing 3C |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
