Difference between revisions of "TSS:Hg 10260.1"
From referenceTSS
| Line 2: | Line 2: | ||
|DFF1= | |DFF1= | ||
|ICAD= | |ICAD= | ||
| − | |all_trans=BC000037:-6 AF103799:-7 BT006980:8 KJ896700:8 AB590590:8 CU675773:8 ENST00000476658.5 | + | |all_trans=BC000037:-6 AF103799:-7 BT006980:8 KJ896700:8 AB590590:8 CU675773:8 ENST00000476658.5:-9 ENST00000377036.2:-18 BC007721:-18 AF087573:-18 AK313317:-20 AK222546:-22 U91985:-44 BC007112:-56 ENST00000377038.8:-59 NM_004401:-59 NM_213566:-59 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=-6 | |distance=-6 | ||
| − | |distance_to_tss= | + | |distance_to_tss=61 |
|end=10472470 | |end=10472470 | ||
|end_of_center_position=10472468 | |end_of_center_position=10472468 | ||
|entrez_id=1676 | |entrez_id=1676 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=DFF-45 | + | |gene_alias=DFF-45{{!}}DFF1{{!}}ICAD |
|gene_description=DNA fragmentation factor subunit alpha | |gene_description=DNA fragmentation factor subunit alpha | ||
|gene_id=1676 | |gene_id=1676 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:2772 | |hgnc_mgi_id=HGNC:2772 | ||
|nearest_ensembl=ENSG00000160049 | |nearest_ensembl=ENSG00000160049 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_004401 |
|nearest_refseq=NM_004401 | |nearest_refseq=NM_004401 | ||
|nearest_unigene=Hs.484782 | |nearest_unigene=Hs.484782 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=10472465 | |start=10472465 | ||
Revision as of 17:07, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 10472467 |
|---|---|
| End of the center position in the TSS region: | 10472468 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC000037 |
|---|---|
| Distance: | -6 |
| Num_trans: | 17 |
| All_trans: | BC000037:-6 AF103799:-7 BT006980:8 KJ896700:8 AB590590:8 CU675773:8 ENST00000476658.5:-9 ENST00000377036.2:-18 BC007721:-18 AF087573:-18 AK313317:-20 AK222546:-22 U91985:-44 BC007112:-56 ENST00000377038.8:-59 NM_004401:-59 NM_213566:-59 |
TATA-Box annotation
| Distance to TSS: | 61 |
|---|---|
| Nearest PromoterID: | NM_004401 |
| Entrez ID: | 1676 |
| Nearest Unigene: | Hs.484782 |
| Nearest Refseq: | NM_004401 |
| Nearest Ensembl: | ENSG00000160049 |
| Gene Name: | DNA fragmentation factor subunit alpha |
| Gene Alias: | DFF-45|DFF1|ICAD |
| Gene Description: | DNA fragmentation factor subunit alpha |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
