Difference between revisions of "TSS:Hg 10263.1"
From referenceTSS
| Line 2: | Line 2: | ||
|DFF1= | |DFF1= | ||
|ICAD= | |ICAD= | ||
| − | |all_trans= | + | |all_trans=ENST00000377038.8:42 NM_004401:42 NM_213566:42 BC007112:45 U91985:57 AK222546:79 AK313317:81 ENST00000377036.2:83 BC007721:83 AF087573:83 ENST00000476658.5:92 AF103799:94 BC000037:95 BT006980:113 KJ896700:113 AB590590:113 CU675773:113 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| − | |distance= | + | |distance=42 |
| − | |distance_to_tss=- | + | |distance_to_tss=-50 |
|end=10472587 | |end=10472587 | ||
|end_of_center_position=10472579 | |end_of_center_position=10472579 | ||
|entrez_id=1676 | |entrez_id=1676 | ||
|gc_percent=0.60199 | |gc_percent=0.60199 | ||
| − | |gene_alias=DFF-45 | + | |gene_alias=DFF-45{{!}}DFF1{{!}}ICAD |
|gene_description=DNA fragmentation factor subunit alpha | |gene_description=DNA fragmentation factor subunit alpha | ||
|gene_id=1676 | |gene_id=1676 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:2772 | |hgnc_mgi_id=HGNC:2772 | ||
|nearest_ensembl=ENSG00000160049 | |nearest_ensembl=ENSG00000160049 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_213566 |
|nearest_refseq=NM_004401 | |nearest_refseq=NM_004401 | ||
|nearest_unigene=Hs.484782 | |nearest_unigene=Hs.484782 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=10472570 | |start=10472570 | ||
|start_of_center_position=10472578 | |start_of_center_position=10472578 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_213566 | + | |transcript_name=ENST00000377038.8 NM_004401 NM_213566 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10263.1 | |tss_id=hg_10263.1 | ||
Revision as of 17:08, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 10472578 |
|---|---|
| End of the center position in the TSS region: | 10472579 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000377038.8 NM_004401 NM_213566 |
|---|---|
| Distance: | 42 |
| Num_trans: | 17 |
| All_trans: | ENST00000377038.8:42 NM_004401:42 NM_213566:42 BC007112:45 U91985:57 AK222546:79 AK313317:81 ENST00000377036.2:83 BC007721:83 AF087573:83 ENST00000476658.5:92 AF103799:94 BC000037:95 BT006980:113 KJ896700:113 AB590590:113 CU675773:113 |
TATA-Box annotation
| Distance to TSS: | -50 |
|---|---|
| Nearest PromoterID: | NM_213566 |
| Entrez ID: | 1676 |
| Nearest Unigene: | Hs.484782 |
| Nearest Refseq: | NM_004401 |
| Nearest Ensembl: | ENSG00000160049 |
| Gene Name: | DNA fragmentation factor subunit alpha |
| Gene Alias: | DFF-45|DFF1|ICAD |
| Gene Description: | DNA fragmentation factor subunit alpha |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.60199 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
