Difference between revisions of "TSS:Hg 102643.1"
From referenceTSS
| Line 2: | Line 2: | ||
|EEIG1= | |EEIG1= | ||
|SYM-3A= | |SYM-3A= | ||
| − | |all_trans=NM_001035254:424 AK058004:424 | + | |all_trans=ENST00000373095.6:-21 NM_001035254:-21 LP896559:424 AK058004:424 ENST00000494606.1:496 |
|bA203J24.7= | |bA203J24.7= | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
| − | |distance= | + | |distance=-21 |
| − | |distance_to_tss= | + | |distance_to_tss=27 |
|end=127980968 | |end=127980968 | ||
|end_of_center_position=127980963 | |end_of_center_position=127980963 | ||
|entrez_id=399665 | |entrez_id=399665 | ||
|gc_percent=0.81592 | |gc_percent=0.81592 | ||
| − | |gene_alias=C9orf132 | + | |gene_alias=C9orf132{{!}}EEIG1{{!}}SYM-3A{{!}}bA203J24.7 |
|gene_description=family with sequence similarity 102 member A | |gene_description=family with sequence similarity 102 member A | ||
|gene_id=399665 | |gene_id=399665 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_203305 | |nearest_refseq=NM_203305 | ||
|nearest_unigene=Hs.535972 | |nearest_unigene=Hs.535972 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=127980956 | |start=127980956 | ||
|start_of_center_position=127980962 | |start_of_center_position=127980962 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_001035254 | + | |transcript_name=ENST00000373095.6 NM_001035254 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102643.1 | |tss_id=hg_102643.1 | ||
Revision as of 17:08, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 127980962 |
|---|---|
| End of the center position in the TSS region: | 127980963 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000373095.6 NM_001035254 |
|---|---|
| Distance: | -21 |
| Num_trans: | 5 |
| All_trans: | ENST00000373095.6:-21 NM_001035254:-21 LP896559:424 AK058004:424 ENST00000494606.1:496 |
TATA-Box annotation
| Distance to TSS: | 27 |
|---|---|
| Nearest PromoterID: | NM_001035254 |
| Entrez ID: | 399665 |
| Nearest Unigene: | Hs.535972 |
| Nearest Refseq: | NM_203305 |
| Nearest Ensembl: | ENSG00000167106 |
| Gene Name: | family with sequence similarity 102 member A |
| Gene Alias: | C9orf132|EEIG1|SYM-3A|bA203J24.7 |
| Gene Description: | family with sequence similarity 102 member A |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.81592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
