Difference between revisions of "TSS:Hg 102648.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=40903 |entrez_id=203245 |gc_percent=0.547264 |gene_alias=C9orf90|bA379C10.2 |gene_description=nuclear apoptosis inducing factor...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |bA379C10.2= | ||
| + | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=NA | ||
|distance_to_tss=40903 | |distance_to_tss=40903 | ||
| + | |end=128026422 | ||
| + | |end_of_center_position=128026418 | ||
|entrez_id=203245 | |entrez_id=203245 | ||
|gc_percent=0.547264 | |gc_percent=0.547264 | ||
| − | |gene_alias=C9orf90 | + | |gene_alias=C9orf90{{!}}bA379C10.2 |
|gene_description=nuclear apoptosis inducing factor 1 | |gene_description=nuclear apoptosis inducing factor 1 | ||
|gene_name=NAIF1 | |gene_name=NAIF1 | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NM_197956 | |nearest_refseq=NM_197956 | ||
|nearest_unigene=Hs.373606 | |nearest_unigene=Hs.373606 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=128026412 | ||
| + | |start_of_center_position=128026417 | ||
| + | |strand=- | ||
| + | |tata_box=-81(GCCCCTTAAAGG,-,0.00),-80(CCCCTTAAAGGG,+,0.00),-80(CCCCTTAAAGGG,-,0.00),-79(CCCTTAAAGGGG,+,0.00),-78(CCTTAAAGGGGA,+,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_102648.1 | |tss_id=hg_102648.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:08, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 128026417 |
|---|---|
| End of the center position in the TSS region: | 128026418 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 40903 |
|---|---|
| Nearest PromoterID: | NM_197956 |
| Entrez ID: | 203245 |
| Nearest Unigene: | Hs.373606 |
| Nearest Refseq: | NM_197956 |
| Nearest Ensembl: | ENSG00000171169 |
| Gene Name: | NAIF1 |
| Gene Alias: | C9orf90|bA379C10.2 |
| Gene Description: | nuclear apoptosis inducing factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -81(GCCCCTTAAAGG,-,0.00),-80(CCCCTTAAAGGG,+,0.00),-80(CCCCTTAAAGGG,-,0.00),-79(CCCTTAAAGGGG,+,0.00),-78(CCTTAAAGGGGA,+,0.00) |
