Difference between revisions of "TSS:Hg 102657.1"
From referenceTSS
| Line 3: | Line 3: | ||
|GBF1= | |GBF1= | ||
|PGES2= | |PGES2= | ||
| − | |all_trans= | + | |all_trans=BC009397:-117 ENST00000485510.5:-131 BC009456:-135 ENST00000496594.5:-137 KJ905547:-138 DQ891904:-138 DQ895090:-138 AB463194:-138 AM392565:-138 ENST00000476655.6:-141 ENST00000676562.1:-144 ENST00000449878.1:-144 AK223520:-144 ENST00000677651.1:-145 ENST00000677980.1:-146 ENST00000338961.11:-149 ENST00000679345.1:-149 NM_025072:-149 AK024100:-149 ENST00000678174.1:-152 ENST00000497109.6:-152 ENST00000474124.6:-152 ENST00000678916.1:-155 ENST00000483625.6:-155 BC011613:-317 ENST00000493205.6:396 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| − | |distance=- | + | |distance=-117 |
| − | |distance_to_tss= | + | |distance_to_tss=153 |
|end=128127580 | |end=128127580 | ||
|end_of_center_position=128127576 | |end_of_center_position=128127576 | ||
|entrez_id=80142 | |entrez_id=80142 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
| − | |gene_alias=C9orf15 | + | |gene_alias=C9orf15{{!}}GBF-1{{!}}GBF1{{!}}PGES2{{!}}mPGES-2 |
|gene_description=prostaglandin E synthase 2 | |gene_description=prostaglandin E synthase 2 | ||
|gene_id=80142 | |gene_id=80142 | ||
| Line 23: | Line 23: | ||
|mPGES-2= | |mPGES-2= | ||
|nearest_ensembl=ENSG00000148334 | |nearest_ensembl=ENSG00000148334 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_025072 |
|nearest_refseq=NM_025072 | |nearest_refseq=NM_025072 | ||
|nearest_unigene=Hs.495219 | |nearest_unigene=Hs.495219 | ||
| − | |num_trans= | + | |num_trans=26 |
|species=human | |species=human | ||
|start=128127571 | |start=128127571 | ||
|start_of_center_position=128127575 | |start_of_center_position=128127575 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=BC009397 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102657.1 | |tss_id=hg_102657.1 | ||
Revision as of 17:09, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 128127575 |
|---|---|
| End of the center position in the TSS region: | 128127576 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC009397 |
|---|---|
| Distance: | -117 |
| Num_trans: | 26 |
| All_trans: | BC009397:-117 ENST00000485510.5:-131 BC009456:-135 ENST00000496594.5:-137 KJ905547:-138 DQ891904:-138 DQ895090:-138 AB463194:-138 AM392565:-138 ENST00000476655.6:-141 ENST00000676562.1:-144 ENST00000449878.1:-144 AK223520:-144 ENST00000677651.1:-145 ENST00000677980.1:-146 ENST00000338961.11:-149 ENST00000679345.1:-149 NM_025072:-149 AK024100:-149 ENST00000678174.1:-152 ENST00000497109.6:-152 ENST00000474124.6:-152 ENST00000678916.1:-155 ENST00000483625.6:-155 BC011613:-317 ENST00000493205.6:396 |
TATA-Box annotation
| Distance to TSS: | 153 |
|---|---|
| Nearest PromoterID: | NM_025072 |
| Entrez ID: | 80142 |
| Nearest Unigene: | Hs.495219 |
| Nearest Refseq: | NM_025072 |
| Nearest Ensembl: | ENSG00000148334 |
| Gene Name: | prostaglandin E synthase 2 |
| Gene Alias: | C9orf15|GBF-1|GBF1|PGES2|mPGES-2 |
| Gene Description: | prostaglandin E synthase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
