Difference between revisions of "TSS:Hg 102659.1"
From referenceTSS
| Line 3: | Line 3: | ||
|GBF1= | |GBF1= | ||
|PGES2= | |PGES2= | ||
| − | |all_trans=ENST00000496594.5:0 | + | |all_trans=ENST00000338961.11:0 ENST00000476655.6:0 ENST00000676562.1:0 ENST00000677651.1:0 ENST00000677980.1:0 ENST00000679345.1:0 ENST00000678174.1:0 ENST00000678916.1:0 ENST00000497109.6:0 ENST00000496594.5:0 ENST00000483625.6:0 ENST00000474124.6:0 ENST00000449878.1:0 NM_025072:0 BC009456:0 AK024100:0 AK223520:0 KJ905547:0 DQ891904:0 DQ895090:0 AB463194:0 AM392565:0 ENST00000485510.5:1 BC009397:15 BC011613:-138 ENST00000485237.1:-355 ENST00000487063.5:-387 ENST00000617202.4:-429 NM_001256335:-429 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-6 |
|end=128127759 | |end=128127759 | ||
|end_of_center_position=128127736 | |end_of_center_position=128127736 | ||
|entrez_id=80142 | |entrez_id=80142 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
| − | |gene_alias=C9orf15 | + | |gene_alias=C9orf15{{!}}GBF-1{{!}}GBF1{{!}}PGES2{{!}}mPGES-2 |
|gene_description=prostaglandin E synthase 2 | |gene_description=prostaglandin E synthase 2 | ||
|gene_id=80142 | |gene_id=80142 | ||
| Line 23: | Line 23: | ||
|mPGES-2= | |mPGES-2= | ||
|nearest_ensembl=ENSG00000148334 | |nearest_ensembl=ENSG00000148334 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_025072 |
|nearest_refseq=NM_025072 | |nearest_refseq=NM_025072 | ||
|nearest_unigene=Hs.495219 | |nearest_unigene=Hs.495219 | ||
| − | |num_trans= | + | |num_trans=29 |
|species=human | |species=human | ||
|start=128127711 | |start=128127711 | ||
|start_of_center_position=128127735 | |start_of_center_position=128127735 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-52(CCCTTTAAACGC,+,0.00),-51(CCTTTAAACGCC,+,0.00) |
| − | |transcript_name=ENST00000496594.5 | + | |transcript_name=ENST00000338961.11 ENST00000476655.6 ENST00000676562.1 ENST00000677651.1 ENST00000677980.1 ENST00000679345.1 ENST00000678174.1 ENST00000678916.1 ENST00000497109.6 ENST00000496594.5 ENST00000483625.6 ENST00000474124.6 ENST00000449878.1 NM_025072 BC009456 AK024100 AK223520 KJ905547 DQ891904 DQ895090 AB463194 AM392565 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102659.1 | |tss_id=hg_102659.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=X6RJ95 | + | |uniprot_id=Q9H7Z7 X6RJ95 |
}} | }} | ||
Revision as of 17:09, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 128127735 |
|---|---|
| End of the center position in the TSS region: | 128127736 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000338961.11 ENST00000476655.6 ENST00000676562.1 ENST00000677651.1 ENST00000677980.1 ENST00000679345.1 ENST00000678174.1 ENST00000678916.1 ENST00000497109.6 ENST00000496594.5 ENST00000483625.6 ENST00000474124.6 ENST00000449878.1 NM_025072 BC009456 AK024100 AK223520 KJ905547 DQ891904 DQ895090 AB463194 AM392565 |
|---|---|
| Distance: | 0 |
| Num_trans: | 29 |
| All_trans: | ENST00000338961.11:0 ENST00000476655.6:0 ENST00000676562.1:0 ENST00000677651.1:0 ENST00000677980.1:0 ENST00000679345.1:0 ENST00000678174.1:0 ENST00000678916.1:0 ENST00000497109.6:0 ENST00000496594.5:0 ENST00000483625.6:0 ENST00000474124.6:0 ENST00000449878.1:0 NM_025072:0 BC009456:0 AK024100:0 AK223520:0 KJ905547:0 DQ891904:0 DQ895090:0 AB463194:0 AM392565:0 ENST00000485510.5:1 BC009397:15 BC011613:-138 ENST00000485237.1:-355 ENST00000487063.5:-387 ENST00000617202.4:-429 NM_001256335:-429 |
TATA-Box annotation
| Distance to TSS: | -6 |
|---|---|
| Nearest PromoterID: | NM_025072 |
| Entrez ID: | 80142 |
| Nearest Unigene: | Hs.495219 |
| Nearest Refseq: | NM_025072 |
| Nearest Ensembl: | ENSG00000148334 |
| Gene Name: | prostaglandin E synthase 2 |
| Gene Alias: | C9orf15|GBF-1|GBF1|PGES2|mPGES-2 |
| Gene Description: | prostaglandin E synthase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -52(CCCTTTAAACGC,+,0.00),-51(CCTTTAAACGCC,+,0.00) |
