Difference between revisions of "TSS:Hg 102660.1"
From referenceTSS
| Line 3: | Line 3: | ||
|GBF1= | |GBF1= | ||
|PGES2= | |PGES2= | ||
| − | |all_trans=BC011613:38 ENST00000485237.1:-168 | + | |all_trans=BC011613:38 ENST00000485237.1:-168 ENST00000678916.1:200 ENST00000483625.6:200 ENST00000487063.5:-200 ENST00000678174.1:203 ENST00000497109.6:203 ENST00000474124.6:203 ENST00000338961.11:206 ENST00000679345.1:206 NM_025072:206 AK024100:206 ENST00000677980.1:209 ENST00000677651.1:210 ENST00000676562.1:211 ENST00000449878.1:211 AK223520:211 ENST00000476655.6:214 KJ905547:217 DQ891904:217 DQ895090:217 AB463194:217 AM392565:217 ENST00000496594.5:218 BC009456:220 ENST00000485510.5:224 BC009397:238 ENST00000617202.4:-242 NM_001256335:-242 ENST00000476748.5:-449 AK301618:-449 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
|distance=38 | |distance=38 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-211 |
|end=128127946 | |end=128127946 | ||
|end_of_center_position=128127941 | |end_of_center_position=128127941 | ||
|entrez_id=80142 | |entrez_id=80142 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
| − | |gene_alias=C9orf15 | + | |gene_alias=C9orf15{{!}}GBF-1{{!}}GBF1{{!}}PGES2{{!}}mPGES-2 |
|gene_description=prostaglandin E synthase 2 | |gene_description=prostaglandin E synthase 2 | ||
|gene_id=80142 | |gene_id=80142 | ||
| Line 23: | Line 23: | ||
|mPGES-2= | |mPGES-2= | ||
|nearest_ensembl=ENSG00000148334 | |nearest_ensembl=ENSG00000148334 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_025072 |
|nearest_refseq=NM_025072 | |nearest_refseq=NM_025072 | ||
|nearest_unigene=Hs.495219 | |nearest_unigene=Hs.495219 | ||
| − | |num_trans= | + | |num_trans=31 |
|species=human | |species=human | ||
|start=128127934 | |start=128127934 | ||
|start_of_center_position=128127940 | |start_of_center_position=128127940 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-89(CCCTTTAGGCGG,+,0.00) |
|transcript_name=BC011613 | |transcript_name=BC011613 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 17:09, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 128127940 |
|---|---|
| End of the center position in the TSS region: | 128127941 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC011613 |
|---|---|
| Distance: | 38 |
| Num_trans: | 31 |
| All_trans: | BC011613:38 ENST00000485237.1:-168 ENST00000678916.1:200 ENST00000483625.6:200 ENST00000487063.5:-200 ENST00000678174.1:203 ENST00000497109.6:203 ENST00000474124.6:203 ENST00000338961.11:206 ENST00000679345.1:206 NM_025072:206 AK024100:206 ENST00000677980.1:209 ENST00000677651.1:210 ENST00000676562.1:211 ENST00000449878.1:211 AK223520:211 ENST00000476655.6:214 KJ905547:217 DQ891904:217 DQ895090:217 AB463194:217 AM392565:217 ENST00000496594.5:218 BC009456:220 ENST00000485510.5:224 BC009397:238 ENST00000617202.4:-242 NM_001256335:-242 ENST00000476748.5:-449 AK301618:-449 |
TATA-Box annotation
| Distance to TSS: | -211 |
|---|---|
| Nearest PromoterID: | NM_025072 |
| Entrez ID: | 80142 |
| Nearest Unigene: | Hs.495219 |
| Nearest Refseq: | NM_025072 |
| Nearest Ensembl: | ENSG00000148334 |
| Gene Name: | prostaglandin E synthase 2 |
| Gene Alias: | C9orf15|GBF-1|GBF1|PGES2|mPGES-2 |
| Gene Description: | prostaglandin E synthase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -89(CCCTTTAGGCGG,+,0.00) |
