Difference between revisions of "TSS:Hg 102661.1"
From referenceTSS
| Line 3: | Line 3: | ||
|GBF1= | |GBF1= | ||
|PGES2= | |PGES2= | ||
| − | |all_trans=ENST00000485237 | + | |all_trans=ENST00000485237.1:0 ENST00000487063.5:-15 ENST00000617202.4:-57 NM_001256335:-57 BC011613:205 ENST00000476748.5:-264 AK301618:-264 ENST00000277462.9:-331 NM_198938:-331 AK057049:-331 ENST00000678916.1:367 ENST00000483625.6:367 ENST00000678174.1:370 ENST00000497109.6:370 ENST00000474124.6:370 ENST00000338961.11:373 ENST00000679345.1:373 NM_025072:373 AK024100:373 ENST00000677980.1:376 ENST00000677651.1:377 ENST00000676562.1:378 ENST00000449878.1:378 AK223520:378 ENST00000476655.6:381 KJ905547:384 DQ891904:384 DQ895090:384 AB463194:384 AM392565:384 ENST00000496594.5:385 BC009456:387 ENST00000485510.5:391 BC009397:405 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| Line 12: | Line 12: | ||
|entrez_id=80142 | |entrez_id=80142 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
| − | |gene_alias=C9orf15 | + | |gene_alias=C9orf15{{!}}GBF-1{{!}}GBF1{{!}}PGES2{{!}}mPGES-2 |
|gene_description=prostaglandin E synthase 2 | |gene_description=prostaglandin E synthase 2 | ||
|gene_id=80142 | |gene_id=80142 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_025072 | |nearest_refseq=NM_025072 | ||
|nearest_unigene=Hs.495219 | |nearest_unigene=Hs.495219 | ||
| − | |num_trans= | + | |num_trans=34 |
|species=human | |species=human | ||
|start=128128101 | |start=128128101 | ||
|start_of_center_position=128128116 | |start_of_center_position=128128116 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=87(CCCTTTAGGCGG,+,0.00) |
| − | |transcript_name=ENST00000485237 | + | |transcript_name=ENST00000485237.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102661.1 | |tss_id=hg_102661.1 | ||
Revision as of 17:09, 15 June 2021
Basic information about the TSS
|
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| Start of the center position in the TSS region: | 128128116 |
|---|---|
| End of the center position in the TSS region: | 128128117 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000485237.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 34 |
| All_trans: | ENST00000485237.1:0 ENST00000487063.5:-15 ENST00000617202.4:-57 NM_001256335:-57 BC011613:205 ENST00000476748.5:-264 AK301618:-264 ENST00000277462.9:-331 NM_198938:-331 AK057049:-331 ENST00000678916.1:367 ENST00000483625.6:367 ENST00000678174.1:370 ENST00000497109.6:370 ENST00000474124.6:370 ENST00000338961.11:373 ENST00000679345.1:373 NM_025072:373 AK024100:373 ENST00000677980.1:376 ENST00000677651.1:377 ENST00000676562.1:378 ENST00000449878.1:378 AK223520:378 ENST00000476655.6:381 KJ905547:384 DQ891904:384 DQ895090:384 AB463194:384 AM392565:384 ENST00000496594.5:385 BC009456:387 ENST00000485510.5:391 BC009397:405 |
TATA-Box annotation
| Distance to TSS: | 72 |
|---|---|
| Nearest PromoterID: | NM_001256335 |
| Entrez ID: | 80142 |
| Nearest Unigene: | Hs.495219 |
| Nearest Refseq: | NM_025072 |
| Nearest Ensembl: | ENSG00000148334 |
| Gene Name: | prostaglandin E synthase 2 |
| Gene Alias: | C9orf15|GBF-1|GBF1|PGES2|mPGES-2 |
| Gene Description: | prostaglandin E synthase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 87(CCCTTTAGGCGG,+,0.00) |
