Difference between revisions of "TSS:Hg 10267.1"
From referenceTSS
| Line 3: | Line 3: | ||
|SRG= | |SRG= | ||
|ZNF693= | |ZNF693= | ||
| − | |all_trans=AK311700:-72 AK293839:-73 ENST00000496432.6 | + | |all_trans=AK311700:-72 AK293839:-73 ENST00000496432.6:-102 ENST00000478728.2:460 BC051883:467 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
|dJ734G22.1= | |dJ734G22.1= | ||
|distance=-72 | |distance=-72 | ||
| − | |distance_to_tss= | + | |distance_to_tss=102272 |
|end=10694377 | |end=10694377 | ||
|end_of_center_position=10694375 | |end_of_center_position=10694375 | ||
|entrez_id=54897 | |entrez_id=54897 | ||
|gc_percent=0.492537 | |gc_percent=0.492537 | ||
| − | |gene_alias=CAS11 | + | |gene_alias=CAS11{{!}}CST{{!}}SRG{{!}}ZNF693{{!}}dJ734G22.1 |
|gene_description=castor zinc finger 1 | |gene_description=castor zinc finger 1 | ||
|gene_id=54897 | |gene_id=54897 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_017766 | |nearest_refseq=NM_017766 | ||
|nearest_unigene=Hs.439894 | |nearest_unigene=Hs.439894 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=10694371 | |start=10694371 | ||
|start_of_center_position=10694374 | |start_of_center_position=10694374 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-32(GCTTTAAAACAA,+,0.00) |
|transcript_name=AK311700 | |transcript_name=AK311700 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 17:09, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 10694374 |
|---|---|
| End of the center position in the TSS region: | 10694375 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK311700 |
|---|---|
| Distance: | -72 |
| Num_trans: | 5 |
| All_trans: | AK311700:-72 AK293839:-73 ENST00000496432.6:-102 ENST00000478728.2:460 BC051883:467 |
TATA-Box annotation
| Distance to TSS: | 102272 |
|---|---|
| Nearest PromoterID: | NM_001079843 |
| Entrez ID: | 54897 |
| Nearest Unigene: | Hs.439894 |
| Nearest Refseq: | NM_017766 |
| Nearest Ensembl: | ENSG00000130940 |
| Gene Name: | castor zinc finger 1 |
| Gene Alias: | CAS11|CST|SRG|ZNF693|dJ734G22.1 |
| Gene Description: | castor zinc finger 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.492537 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -32(GCTTTAAAACAA,+,0.00) |
