Difference between revisions of "TSS:Hg 102675.1"
From referenceTSS
| Line 2: | Line 2: | ||
|NP94= | |NP94= | ||
|ZNF356= | |ZNF356= | ||
| − | |all_trans=ENST00000415526.5 | + | |all_trans=ENST00000415526.5:12 AF234161:12 ENST00000491954.5:-101 AF159025:-122 ENST00000393608.5:-124 ENST00000498156.5:-125 ENST00000277465.8:-127 BC004119:-127 ENST00000474442.1:255 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance=12 | |distance=12 | ||
| − | |distance_to_tss= | + | |distance_to_tss=845 |
|end=128190733 | |end=128190733 | ||
|end_of_center_position=128190728 | |end_of_center_position=128190728 | ||
|entrez_id=25792 | |entrez_id=25792 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
| − | |gene_alias=LSFR1 | + | |gene_alias=LSFR1{{!}}NP94{{!}}ZNF356 |
|gene_description=CDKN1A interacting zinc finger protein 1 | |gene_description=CDKN1A interacting zinc finger protein 1 | ||
|gene_id=25792 | |gene_id=25792 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:16744 | |hgnc_mgi_id=HGNC:16744 | ||
|nearest_ensembl=ENSG00000148337 | |nearest_ensembl=ENSG00000148337 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001257976 |
|nearest_refseq=NM_012127 | |nearest_refseq=NM_012127 | ||
|nearest_unigene=Hs.212395 | |nearest_unigene=Hs.212395 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=128190721 | |start=128190721 | ||
|start_of_center_position=128190727 | |start_of_center_position=128190727 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000415526.5 | + | |transcript_name=ENST00000415526.5 AF234161 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102675.1 | |tss_id=hg_102675.1 | ||
Revision as of 17:09, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 128190727 |
|---|---|
| End of the center position in the TSS region: | 128190728 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000415526.5 AF234161 |
|---|---|
| Distance: | 12 |
| Num_trans: | 9 |
| All_trans: | ENST00000415526.5:12 AF234161:12 ENST00000491954.5:-101 AF159025:-122 ENST00000393608.5:-124 ENST00000498156.5:-125 ENST00000277465.8:-127 BC004119:-127 ENST00000474442.1:255 |
TATA-Box annotation
| Distance to TSS: | 845 |
|---|---|
| Nearest PromoterID: | NM_001257976 |
| Entrez ID: | 25792 |
| Nearest Unigene: | Hs.212395 |
| Nearest Refseq: | NM_012127 |
| Nearest Ensembl: | ENSG00000148337 |
| Gene Name: | CDKN1A interacting zinc finger protein 1 |
| Gene Alias: | LSFR1|NP94|ZNF356 |
| Gene Description: | CDKN1A interacting zinc finger protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
