Difference between revisions of "TSS:Hg 102676.1"
From referenceTSS
| Line 2: | Line 2: | ||
|NP94= | |NP94= | ||
|ZNF356= | |ZNF356= | ||
| − | |all_trans=ENST00000372954.5:0 ENST00000357558.9:0 ENST00000629610.2 | + | |all_trans=ENST00000372954.5:0 ENST00000372938.10:0 ENST00000357558.9:0 ENST00000629610.2:0 ENST00000476727.6:0 ENST00000467178.5:0 NM_001131018:0 NM_001131017:0 NM_001257976:0 NM_001131016:0 BC021163:0 AK303288:0 AK303636:0 AK027287:0 AK292713:0 AK316393:0 AB030835:0 ENST00000488559.6:51 ENST00000420484.2:87 ENST00000324544.6:-180 ENST00000538431.5:-342 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=4 |
|end=128191597 | |end=128191597 | ||
|end_of_center_position=128191568 | |end_of_center_position=128191568 | ||
|entrez_id=25792 | |entrez_id=25792 | ||
|gc_percent=0.81592 | |gc_percent=0.81592 | ||
| − | |gene_alias=LSFR1 | + | |gene_alias=LSFR1{{!}}NP94{{!}}ZNF356 |
|gene_description=CDKN1A interacting zinc finger protein 1 | |gene_description=CDKN1A interacting zinc finger protein 1 | ||
|gene_id=25792 | |gene_id=25792 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:16744 | |hgnc_mgi_id=HGNC:16744 | ||
|nearest_ensembl=ENSG00000148337 | |nearest_ensembl=ENSG00000148337 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001257976 |
|nearest_refseq=NM_012127 | |nearest_refseq=NM_012127 | ||
|nearest_unigene=Hs.212395 | |nearest_unigene=Hs.212395 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=human | |species=human | ||
|start=128191538 | |start=128191538 | ||
|start_of_center_position=128191567 | |start_of_center_position=128191567 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000372954.5 ENST00000357558.9 ENST00000629610.2 | + | |transcript_name=ENST00000372954.5 ENST00000372938.10 ENST00000357558.9 ENST00000629610.2 ENST00000476727.6 ENST00000467178.5 NM_001131018 NM_001131017 NM_001257976 NM_001131016 BC021163 AK303288 AK303636 AK027287 AK292713 AK316393 AB030835 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102676.1 | |tss_id=hg_102676.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A024R885 B4E0A3 Q96KB7 Q9ULV3 | + | |uniprot_id=A0A024R885 B4E0A3 Q5SYW2 Q96KB7 Q9ULV3 |
}} | }} | ||
Revision as of 17:09, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 128191567 |
|---|---|
| End of the center position in the TSS region: | 128191568 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000372954.5 ENST00000372938.10 ENST00000357558.9 ENST00000629610.2 ENST00000476727.6 ENST00000467178.5 NM_001131018 NM_001131017 NM_001257976 NM_001131016 BC021163 AK303288 AK303636 AK027287 AK292713 AK316393 AB030835 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | ENST00000372954.5:0 ENST00000372938.10:0 ENST00000357558.9:0 ENST00000629610.2:0 ENST00000476727.6:0 ENST00000467178.5:0 NM_001131018:0 NM_001131017:0 NM_001257976:0 NM_001131016:0 BC021163:0 AK303288:0 AK303636:0 AK027287:0 AK292713:0 AK316393:0 AB030835:0 ENST00000488559.6:51 ENST00000420484.2:87 ENST00000324544.6:-180 ENST00000538431.5:-342 |
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_001257976 |
| Entrez ID: | 25792 |
| Nearest Unigene: | Hs.212395 |
| Nearest Refseq: | NM_012127 |
| Nearest Ensembl: | ENSG00000148337 |
| Gene Name: | CDKN1A interacting zinc finger protein 1 |
| Gene Alias: | LSFR1|NP94|ZNF356 |
| Gene Description: | CDKN1A interacting zinc finger protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.81592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
