Difference between revisions of "TSS:Hg 102684.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000610329.4:0 | + | |all_trans=ENST00000610329.4:0 NM_004486:0 NM_001366244:0 NM_001366246:0 BX647920:0 AF248953:0 KJ901459:0 CU686726:0 ENST00000490628.2:-16 ENST00000421699.7:-18 ENST00000611957.4:-18 BC069268:-18 ENST00000450617.6:-24 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-1 |
|end=128275971 | |end=128275971 | ||
|end_of_center_position=128275954 | |end_of_center_position=128275954 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:4425 | |hgnc_mgi_id=HGNC:4425 | ||
|nearest_ensembl=ENSG00000167110 | |nearest_ensembl=ENSG00000167110 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001366244 |
|nearest_refseq=NM_004486 | |nearest_refseq=NM_004486 | ||
|nearest_unigene=Hs.155827 | |nearest_unigene=Hs.155827 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=human | |species=human | ||
|start=128275935 | |start=128275935 | ||
|start_of_center_position=128275953 | |start_of_center_position=128275953 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000610329.4 | + | |transcript_name=ENST00000610329.4 NM_004486 NM_001366244 NM_001366246 BX647920 AF248953 KJ901459 CU686726 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102684.1 | |tss_id=hg_102684.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A087WYC0 | + | |uniprot_id=A0A087WYC0 Q08379 Q5HYE0 |
}} | }} | ||
Revision as of 17:09, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 128275953 |
|---|---|
| End of the center position in the TSS region: | 128275954 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000610329.4 NM_004486 NM_001366244 NM_001366246 BX647920 AF248953 KJ901459 CU686726 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | ENST00000610329.4:0 NM_004486:0 NM_001366244:0 NM_001366246:0 BX647920:0 AF248953:0 KJ901459:0 CU686726:0 ENST00000490628.2:-16 ENST00000421699.7:-18 ENST00000611957.4:-18 BC069268:-18 ENST00000450617.6:-24 |
TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NM_001366244 |
| Entrez ID: | 2801 |
| Nearest Unigene: | Hs.155827 |
| Nearest Refseq: | NM_004486 |
| Nearest Ensembl: | ENSG00000167110 |
| Gene Name: | golgin A2 |
| Gene Alias: | GM130 |
| Gene Description: | golgin A2 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
