Difference between revisions of "TSS:Hg 102692.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|MIRN219-2= | |MIRN219-2= | ||
| − | |all_trans=ENST00000608502.2 | + | |all_trans=ENST00000608502.2:0 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| Line 10: | Line 10: | ||
|entrez_id=407003 | |entrez_id=407003 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
| − | |gene_alias=MIR219-2 | + | |gene_alias=MIR219-2{{!}}MIRN219-2{{!}}hsa-mir-219a-2{{!}}mir-219a-2 |
|gene_description=microRNA 219a-2 | |gene_description=microRNA 219a-2 | ||
|gene_id=407003 | |gene_id=407003 | ||
| − | |gene_name= | + | |gene_name=MIR219A2 |
|gene_source=HGNC:31598 | |gene_source=HGNC:31598 | ||
|gene_symbol=MIR219A2 | |gene_symbol=MIR219A2 | ||
| Line 21: | Line 21: | ||
|hsa-mir-219a-2= | |hsa-mir-219a-2= | ||
|mir-219a-2= | |mir-219a-2= | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000284185 |
|nearest_promoter_id=NR_029837 | |nearest_promoter_id=NR_029837 | ||
|nearest_refseq=NR_029837 | |nearest_refseq=NR_029837 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=128393494 | |start=128393494 | ||
|start_of_center_position=128393502 | |start_of_center_position=128393502 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-33(GTCTTTAAGAGC,-,0.00),-32(TCTTTAAGAGCT,+,0.00) |
| − | |transcript_name=ENST00000608502.2 | + | |transcript_name=ENST00000608502.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102692.1 | |tss_id=hg_102692.1 | ||
Latest revision as of 17:09, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 128393502 |
|---|---|
| End of the center position in the TSS region: | 128393503 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000608502.2 |
|---|---|
| Distance: | 0 |
| Num_trans: | 1 |
| All_trans: | ENST00000608502.2:0 |
TATA-Box annotation
| Distance to TSS: | -788 |
|---|---|
| Nearest PromoterID: | NR_029837 |
| Entrez ID: | 407003 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_029837 |
| Nearest Ensembl: | ENSG00000284185 |
| Gene Name: | MIR219A2 |
| Gene Alias: | MIR219-2|MIRN219-2|hsa-mir-219a-2|mir-219a-2 |
| Gene Description: | microRNA 219a-2 |
| Gene Type: | ncRNA |
| CpG%: | 0.07 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(GTCTTTAAGAGC,-,0.00),-32(TCTTTAAGAGCT,+,0.00) |
