Difference between revisions of "TSS:Hg 102700.1"
From referenceTSS
| Line 6: | Line 6: | ||
|TAF-I= | |TAF-I= | ||
|TAF-IBETA= | |TAF-IBETA= | ||
| + | |all_trans=ENST00000652876.1:-37 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=-37 |
| − | |distance_to_tss= | + | |distance_to_tss=638 |
|end=128684440 | |end=128684440 | ||
|end_of_center_position=128684432 | |end_of_center_position=128684432 | ||
|entrez_id=6418 | |entrez_id=6418 | ||
|gc_percent=0.572139 | |gc_percent=0.572139 | ||
| − | |gene_alias=2PP2A | + | |gene_alias=2PP2A{{!}}I2PP2A{{!}}IGAAD{{!}}IPP2A2{{!}}MRD58{{!}}PHAPII{{!}}TAF-I{{!}}TAF-IBETA |
|gene_description=SET nuclear proto-oncogene | |gene_description=SET nuclear proto-oncogene | ||
| − | |gene_name= | + | |gene_id= |
| + | |gene_name=high mobility group AT-hook 1 pseudogene 4 | ||
| + | |gene_source=HGNC:39093 | ||
| + | |gene_symbol=HMGA1P4 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:39093 | ||
|nearest_ensembl=ENSG00000119335 | |nearest_ensembl=ENSG00000119335 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001122821 |
|nearest_refseq=NM_003011 | |nearest_refseq=NM_003011 | ||
|nearest_unigene=Hs.436687 | |nearest_unigene=Hs.436687 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=128684422 | |start=128684422 | ||
|start_of_center_position=128684431 | |start_of_center_position=128684431 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000652876.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_102700.1 | |tss_id=hg_102700.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:10, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 128684431 |
|---|---|
| End of the center position in the TSS region: | 128684432 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000652876.1 |
|---|---|
| Distance: | -37 |
| Num_trans: | 1 |
| All_trans: | ENST00000652876.1:-37 |
TATA-Box annotation
| Distance to TSS: | 638 |
|---|---|
| Nearest PromoterID: | NM_001122821 |
| Entrez ID: | 6418 |
| Nearest Unigene: | Hs.436687 |
| Nearest Refseq: | NM_003011 |
| Nearest Ensembl: | ENSG00000119335 |
| Gene Name: | high mobility group AT-hook 1 pseudogene 4 |
| Gene Alias: | 2PP2A|I2PP2A|IGAAD|IPP2A2|MRD58|PHAPII|TAF-I|TAF-IBETA |
| Gene Description: | SET nuclear proto-oncogene |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.572139 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
