Difference between revisions of "TSS:Hg 102710.1"
From referenceTSS
| Line 2: | Line 2: | ||
|CENP-32= | |CENP-32= | ||
|HSPC109= | |HSPC109= | ||
| − | |all_trans=ENST00000361256. | + | |all_trans=ENST00000361256.10:0 NM_016390:0 AL110193:0 AK303563:0 LF205626:0 MA441203:0 BC010579:0 BC046133:0 BC063644:0 BC021273:0 BC056890:0 BC033677:0 BC039590:0 AF161459:0 HQ448052:0 CU687792:0 ENST00000466556.5:1 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-6 |
|end=128829821 | |end=128829821 | ||
|end_of_center_position=128829801 | |end_of_center_position=128829801 | ||
|entrez_id=51490 | |entrez_id=51490 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
| − | |gene_alias=C9orf114 | + | |gene_alias=C9orf114{{!}}CENP-32{{!}}CENP32{{!}}HSPC109 |
|gene_description=SPOUT domain containing methyltransferase 1 | |gene_description=SPOUT domain containing methyltransferase 1 | ||
|gene_id=51490 | |gene_id=51490 | ||
| − | |gene_name= | + | |gene_name=SPOUT domain containing methyltransferase 1 |
|gene_source=HGNC:26933 | |gene_source=HGNC:26933 | ||
| − | |gene_symbol= | + | |gene_symbol=SPOUT1 |
|gene_synonyms=CENP-32 HSPC109 | |gene_synonyms=CENP-32 HSPC109 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_016390 | |nearest_refseq=NM_016390 | ||
|nearest_unigene=Hs.224137 | |nearest_unigene=Hs.224137 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=128829779 | |start=128829779 | ||
|start_of_center_position=128829800 | |start_of_center_position=128829800 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000361256. | + | |transcript_name=ENST00000361256.10 NM_016390 AL110193 AK303563 LF205626 MA441203 BC010579 BC046133 BC063644 BC021273 BC056890 BC033677 BC039590 AF161459 HQ448052 CU687792 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102710.1 | |tss_id=hg_102710.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=B4E0X4 Q5T280 Q9P041 |
}} | }} | ||
Revision as of 17:10, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 128829800 |
|---|---|
| End of the center position in the TSS region: | 128829801 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000361256.10 NM_016390 AL110193 AK303563 LF205626 MA441203 BC010579 BC046133 BC063644 BC021273 BC056890 BC033677 BC039590 AF161459 HQ448052 CU687792 |
|---|---|
| Distance: | 0 |
| Num_trans: | 17 |
| All_trans: | ENST00000361256.10:0 NM_016390:0 AL110193:0 AK303563:0 LF205626:0 MA441203:0 BC010579:0 BC046133:0 BC063644:0 BC021273:0 BC056890:0 BC033677:0 BC039590:0 AF161459:0 HQ448052:0 CU687792:0 ENST00000466556.5:1 |
TATA-Box annotation
| Distance to TSS: | -6 |
|---|---|
| Nearest PromoterID: | NM_016390 |
| Entrez ID: | 51490 |
| Nearest Unigene: | Hs.224137 |
| Nearest Refseq: | NM_016390 |
| Nearest Ensembl: | ENSG00000198917 |
| Gene Name: | SPOUT domain containing methyltransferase 1 |
| Gene Alias: | C9orf114|CENP-32|CENP32|HSPC109 |
| Gene Description: | SPOUT domain containing methyltransferase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
