Difference between revisions of "TSS:Hg 102712.1"
From referenceTSS
| Line 3: | Line 3: | ||
|KAT1= | |KAT1= | ||
|KATI= | |KATI= | ||
| − | |all_trans=ENST00000320665.10:0 | + | |all_trans=ENST00000651925.1:0 ENST00000302586.8:0 ENST00000320665.10:0 ENST00000436267.7:0 ENST00000474824.1:0 NM_004059:0 BC033685:0 AK297995:0 AK314427:0 BC022468:-61 ENST00000462722.5:-65 BC021262:-65 AK291178:-98 NM_001352991:-104 NM_001352994:-104 NM_001352992:-104 NM_001287390:-104 NM_001352997:-104 NM_001122671:-104 NM_001352990:-104 NM_001352995:-104 NM_001122672:-104 NM_001352996:-104 NM_001352999:-104 NM_001352998:-104 NR_109829:-104 NR_148224:-104 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=3 |
|end=128881971 | |end=128881971 | ||
|end_of_center_position=128881948 | |end_of_center_position=128881948 | ||
|entrez_id=883 | |entrez_id=883 | ||
|gc_percent=0.676617 | |gc_percent=0.676617 | ||
| − | |gene_alias=CCBL1 | + | |gene_alias=CCBL1{{!}}GTK{{!}}KAT1{{!}}KATI |
|gene_description=kynurenine aminotransferase 1 | |gene_description=kynurenine aminotransferase 1 | ||
|gene_id=883 | |gene_id=883 | ||
| − | |gene_name= | + | |gene_name=kynurenine aminotransferase 1 |
|gene_source=HGNC:1564 | |gene_source=HGNC:1564 | ||
| − | |gene_symbol= | + | |gene_symbol=KYAT1 |
|gene_synonyms=GTK KATI | |gene_synonyms=GTK KATI | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:1564 | |hgnc_mgi_id=HGNC:1564 | ||
|nearest_ensembl=ENSG00000171097 | |nearest_ensembl=ENSG00000171097 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_004059 |
|nearest_refseq=NM_004059 | |nearest_refseq=NM_004059 | ||
|nearest_unigene=Hs.495250 | |nearest_unigene=Hs.495250 | ||
| − | |num_trans= | + | |num_trans=27 |
|species=human | |species=human | ||
|start=128881923 | |start=128881923 | ||
|start_of_center_position=128881947 | |start_of_center_position=128881947 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-25(CCCCCTTAAAGG,-,0.00),-24(CCCCTTAAAGGG,+,0.00),-24(CCCCTTAAAGGG,-,0.00),-23(CCCTTAAAGGGA,+,0.00),-22(CCTTAAAGGGAC,+,0.00) |
| − | |transcript_name=ENST00000320665.10 ENST00000474824.1 | + | |transcript_name=ENST00000651925.1 ENST00000302586.8 ENST00000320665.10 ENST00000436267.7 ENST00000474824.1 NM_004059 BC033685 AK297995 AK314427 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102712.1 | |tss_id=hg_102712.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q16773 | + | |uniprot_id=A8K563 B7Z4W5 Q16773 |
}} | }} | ||
Revision as of 17:10, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 128881947 |
|---|---|
| End of the center position in the TSS region: | 128881948 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000651925.1 ENST00000302586.8 ENST00000320665.10 ENST00000436267.7 ENST00000474824.1 NM_004059 BC033685 AK297995 AK314427 |
|---|---|
| Distance: | 0 |
| Num_trans: | 27 |
| All_trans: | ENST00000651925.1:0 ENST00000302586.8:0 ENST00000320665.10:0 ENST00000436267.7:0 ENST00000474824.1:0 NM_004059:0 BC033685:0 AK297995:0 AK314427:0 BC022468:-61 ENST00000462722.5:-65 BC021262:-65 AK291178:-98 NM_001352991:-104 NM_001352994:-104 NM_001352992:-104 NM_001287390:-104 NM_001352997:-104 NM_001122671:-104 NM_001352990:-104 NM_001352995:-104 NM_001122672:-104 NM_001352996:-104 NM_001352999:-104 NM_001352998:-104 NR_109829:-104 NR_148224:-104 |
TATA-Box annotation
| Distance to TSS: | 3 |
|---|---|
| Nearest PromoterID: | NM_004059 |
| Entrez ID: | 883 |
| Nearest Unigene: | Hs.495250 |
| Nearest Refseq: | NM_004059 |
| Nearest Ensembl: | ENSG00000171097 |
| Gene Name: | kynurenine aminotransferase 1 |
| Gene Alias: | CCBL1|GTK|KAT1|KATI |
| Gene Description: | kynurenine aminotransferase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -25(CCCCCTTAAAGG,-,0.00),-24(CCCCTTAAAGGG,+,0.00),-24(CCCCTTAAAGGG,-,0.00),-23(CCCTTAAAGGGA,+,0.00),-22(CCTTAAAGGGAC,+,0.00) |
