Difference between revisions of "TSS:Hg 102713.1"
From referenceTSS
| Line 3: | Line 3: | ||
|KAT1= | |KAT1= | ||
|KATI= | |KATI= | ||
| − | |all_trans=ENST00000462722.5:0 | + | |all_trans=ENST00000462722.5:0 NM_001352991:0 NM_001352994:0 NM_001352992:0 NM_001287390:0 NM_001352997:0 NM_001122671:0 NM_001352990:0 NM_001352995:0 NM_001122672:0 NM_001352996:0 NM_001352999:0 NM_001352998:0 NR_109829:0 NR_148224:0 BC021262:0 AK291178:0 BC022468:0 ENST00000302586.8:78 NM_004059:78 ENST00000474824.1:83 AK314427:84 ENST00000651925.1:97 ENST00000436267.7:97 AK297995:97 ENST00000320665.10:99 BC033685:99 LF346616:-390 MA582193:-390 ENST00000451800.5:-405 NM_001352989:-434 NM_001352988:-434 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| Line 12: | Line 12: | ||
|entrez_id=883 | |entrez_id=883 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
| − | |gene_alias=CCBL1 | + | |gene_alias=CCBL1{{!}}GTK{{!}}KAT1{{!}}KATI |
|gene_description=kynurenine aminotransferase 1 | |gene_description=kynurenine aminotransferase 1 | ||
|gene_id=883 | |gene_id=883 | ||
| − | |gene_name= | + | |gene_name=kynurenine aminotransferase 1 |
|gene_source=HGNC:1564 | |gene_source=HGNC:1564 | ||
| − | |gene_symbol= | + | |gene_symbol=KYAT1 |
|gene_synonyms=GTK KATI | |gene_synonyms=GTK KATI | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:1564 | |hgnc_mgi_id=HGNC:1564 | ||
|nearest_ensembl=ENSG00000171097 | |nearest_ensembl=ENSG00000171097 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001352991 |
|nearest_refseq=NM_004059 | |nearest_refseq=NM_004059 | ||
|nearest_unigene=Hs.495250 | |nearest_unigene=Hs.495250 | ||
| − | |num_trans= | + | |num_trans=32 |
|species=human | |species=human | ||
|start=128882027 | |start=128882027 | ||
|start_of_center_position=128882058 | |start_of_center_position=128882058 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=86(CCCCCTTAAAGG,-,0.00),87(CCCCTTAAAGGG,+,0.00),87(CCCCTTAAAGGG,-,0.00),88(CCCTTAAAGGGA,+,0.00),89(CCTTAAAGGGAC,+,0.00) |
| − | |transcript_name=ENST00000462722.5 | + | |transcript_name=ENST00000462722.5 NM_001352991 NM_001352994 NM_001352992 NM_001287390 NM_001352997 NM_001122671 NM_001352990 NM_001352995 NM_001122672 NM_001352996 NM_001352999 NM_001352998 NR_109829 NR_148224 BC021262 AK291178 BC022468 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102713.1 | |tss_id=hg_102713.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=B7Z4W5 Q16773 |
}} | }} | ||
Revision as of 17:10, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 128882058 |
|---|---|
| End of the center position in the TSS region: | 128882059 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000462722.5 NM_001352991 NM_001352994 NM_001352992 NM_001287390 NM_001352997 NM_001122671 NM_001352990 NM_001352995 NM_001122672 NM_001352996 NM_001352999 NM_001352998 NR_109829 NR_148224 BC021262 AK291178 BC022468 |
|---|---|
| Distance: | 0 |
| Num_trans: | 32 |
| All_trans: | ENST00000462722.5:0 NM_001352991:0 NM_001352994:0 NM_001352992:0 NM_001287390:0 NM_001352997:0 NM_001122671:0 NM_001352990:0 NM_001352995:0 NM_001122672:0 NM_001352996:0 NM_001352999:0 NM_001352998:0 NR_109829:0 NR_148224:0 BC021262:0 AK291178:0 BC022468:0 ENST00000302586.8:78 NM_004059:78 ENST00000474824.1:83 AK314427:84 ENST00000651925.1:97 ENST00000436267.7:97 AK297995:97 ENST00000320665.10:99 BC033685:99 LF346616:-390 MA582193:-390 ENST00000451800.5:-405 NM_001352989:-434 NM_001352988:-434 |
TATA-Box annotation
| Distance to TSS: | 17 |
|---|---|
| Nearest PromoterID: | NM_001352991 |
| Entrez ID: | 883 |
| Nearest Unigene: | Hs.495250 |
| Nearest Refseq: | NM_004059 |
| Nearest Ensembl: | ENSG00000171097 |
| Gene Name: | kynurenine aminotransferase 1 |
| Gene Alias: | CCBL1|GTK|KAT1|KATI |
| Gene Description: | kynurenine aminotransferase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 86(CCCCCTTAAAGG,-,0.00),87(CCCCTTAAAGGG,+,0.00),87(CCCCTTAAAGGG,-,0.00),88(CCCTTAAAGGGA,+,0.00),89(CCTTAAAGGGAC,+,0.00) |
