Difference between revisions of "TSS:Hg 102721.1"
From referenceTSS
| Line 2: | Line 2: | ||
|PP9455= | |PP9455= | ||
|RRIG1= | |RRIG1= | ||
| − | |all_trans=ENST00000372559.5:0 ENST00000416629.5:0 ENST00000416230 | + | |all_trans=ENST00000372559.5:0 ENST00000416629.5:0 ENST00000416230.1:0 AF257319:0 ENST00000417224.5:3 AF258589:-26 AB384306:32 EU832345:32 EU832430:32 KJ894359:33 ENST00000372554.8:-39 AB058751:-39 ENST00000483980.5:-55 BC014635:-60 ENST00000455407.5:-63 ENST00000372564.8:-91 NM_020145:-91 NM_001369914:-91 NM_001369913:-91 NR_163192:-91 NM_001369915:-91 NM_001287046:-113 NM_001287045:-113 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=117 |
|end=129028240 | |end=129028240 | ||
|end_of_center_position=129028214 | |end_of_center_position=129028214 | ||
|entrez_id=56904 | |entrez_id=56904 | ||
|gc_percent=0.800995 | |gc_percent=0.800995 | ||
| − | |gene_alias=PP6569 | + | |gene_alias=PP6569{{!}}PP9455{{!}}RRIG1 |
| − | |gene_description=SH3 domain containing GRB2 like endophilin B2 | + | |gene_description=SH3 domain containing GRB2 like, endophilin B2 |
|gene_id=56904 | |gene_id=56904 | ||
| − | |gene_name=SH3 | + | |gene_name=SH3 domain containing GRB2 like, endophilin B2 |
|gene_source=HGNC:10834 | |gene_source=HGNC:10834 | ||
|gene_symbol=SH3GLB2 | |gene_symbol=SH3GLB2 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:10834 | |hgnc_mgi_id=HGNC:10834 | ||
|nearest_ensembl=ENSG00000148341 | |nearest_ensembl=ENSG00000148341 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_163192 |
|nearest_refseq=NM_020145 | |nearest_refseq=NM_020145 | ||
|nearest_unigene=Hs.460238 | |nearest_unigene=Hs.460238 | ||
| − | |num_trans= | + | |num_trans=23 |
|species=human | |species=human | ||
|start=129028187 | |start=129028187 | ||
|start_of_center_position=129028213 | |start_of_center_position=129028213 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000372559.5 ENST00000416629.5 ENST00000416230 | + | |transcript_name=ENST00000372559.5 ENST00000416629.5 ENST00000416230.1 AF257319 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102721.1 | |tss_id=hg_102721.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A024R896 B7ZC39 F8WFB9 | + | |uniprot_id=A0A024R896 B7ZC39 F8WFB9 |
}} | }} | ||
Revision as of 17:10, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 129028213 |
|---|---|
| End of the center position in the TSS region: | 129028214 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000372559.5 ENST00000416629.5 ENST00000416230.1 AF257319 |
|---|---|
| Distance: | 0 |
| Num_trans: | 23 |
| All_trans: | ENST00000372559.5:0 ENST00000416629.5:0 ENST00000416230.1:0 AF257319:0 ENST00000417224.5:3 AF258589:-26 AB384306:32 EU832345:32 EU832430:32 KJ894359:33 ENST00000372554.8:-39 AB058751:-39 ENST00000483980.5:-55 BC014635:-60 ENST00000455407.5:-63 ENST00000372564.8:-91 NM_020145:-91 NM_001369914:-91 NM_001369913:-91 NR_163192:-91 NM_001369915:-91 NM_001287046:-113 NM_001287045:-113 |
TATA-Box annotation
| Distance to TSS: | 117 |
|---|---|
| Nearest PromoterID: | NR_163192 |
| Entrez ID: | 56904 |
| Nearest Unigene: | Hs.460238 |
| Nearest Refseq: | NM_020145 |
| Nearest Ensembl: | ENSG00000148341 |
| Gene Name: | SH3 domain containing GRB2 like, endophilin B2 |
| Gene Alias: | PP6569|PP9455|RRIG1 |
| Gene Description: | SH3 domain containing GRB2 like, endophilin B2 |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.800995 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
