Difference between revisions of "TSS:Hg 102725.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|CAT1= | |CAT1= | ||
| + | |all_trans=LF346678:353 MA582255:353 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| − | |distance= | + | |distance=353 |
| − | |distance_to_tss= | + | |distance_to_tss=8394 |
|end=129102401 | |end=129102401 | ||
|end_of_center_position=129102399 | |end_of_center_position=129102399 | ||
|entrez_id=1384 | |entrez_id=1384 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=CAT | + | |gene_alias=CAT{{!}}CAT1{{!}}NBIA8 |
|gene_description=carnitine O-acetyltransferase | |gene_description=carnitine O-acetyltransferase | ||
|gene_name=CRAT | |gene_name=CRAT | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000095321 | |nearest_ensembl=ENSG00000095321 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001346549 |
|nearest_refseq=NM_000755 | |nearest_refseq=NM_000755 | ||
|nearest_unigene=Hs.12068 | |nearest_unigene=Hs.12068 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=129102396 | |start=129102396 | ||
|start_of_center_position=129102398 | |start_of_center_position=129102398 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF346678 MA582255 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_102725.1 | |tss_id=hg_102725.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:10, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 129102398 |
|---|---|
| End of the center position in the TSS region: | 129102399 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF346678 MA582255 |
|---|---|
| Distance: | 353 |
| Num_trans: | 2 |
| All_trans: | LF346678:353 MA582255:353 |
TATA-Box annotation
| Distance to TSS: | 8394 |
|---|---|
| Nearest PromoterID: | NM_001346549 |
| Entrez ID: | 1384 |
| Nearest Unigene: | Hs.12068 |
| Nearest Refseq: | NM_000755 |
| Nearest Ensembl: | ENSG00000095321 |
| Gene Name: | CRAT |
| Gene Alias: | CAT|CAT1|NBIA8 |
| Gene Description: | carnitine O-acetyltransferase |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
