Difference between revisions of "TSS:Hg 102728.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|CAT1= | |CAT1= | ||
| − | |all_trans=X78706:0 KJ901354:0 BT006801:0 CU674362:0 ENST00000455830.2:-163 | + | |all_trans=X78706:0 KJ901354:0 BT006801:0 CU674362:0 ENST00000681689.1:-36 ENST00000455830.2:-163 ENST00000455396.2:-172 ENST00000681118.1:-174 AK313931:-193 ENST00000679520.1:-201 ENST00000681911.1:-201 ENST00000415948.6:-201 ENST00000393384.3:-202 BC000723:-221 ENST00000681627.1:-228 ENST00000681622.1:-238 ENST00000680093.1:-242 ENST00000441796.1:-260 ENST00000681040.1:-273 ENST00000458362.5:-273 ENST00000680523.1:-282 ENST00000681325.1:-282 ENST00000680117.1:-282 ENST00000681725.1:-282 ENST00000318080.7:-284 NM_001346546:-284 NM_004003:-284 NM_000755:-284 NM_001346549:-284 NM_001346548:-284 NM_001257363:-284 NM_001346547:-284 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=289 |
|end=129110509 | |end=129110509 | ||
|end_of_center_position=129110504 | |end_of_center_position=129110504 | ||
|entrez_id=1384 | |entrez_id=1384 | ||
|gc_percent=0.746269 | |gc_percent=0.746269 | ||
| − | |gene_alias=CAT | + | |gene_alias=CAT{{!}}CAT1{{!}}NBIA8 |
|gene_description=carnitine O-acetyltransferase | |gene_description=carnitine O-acetyltransferase | ||
|gene_id=1384 | |gene_id=1384 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:2342 | |hgnc_mgi_id=HGNC:2342 | ||
|nearest_ensembl=ENSG00000095321 | |nearest_ensembl=ENSG00000095321 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001346549 |
|nearest_refseq=NM_000755 | |nearest_refseq=NM_000755 | ||
|nearest_unigene=Hs.12068 | |nearest_unigene=Hs.12068 | ||
| − | |num_trans= | + | |num_trans=32 |
|species=human | |species=human | ||
|start=129110498 | |start=129110498 | ||
Revision as of 17:10, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 129110503 |
|---|---|
| End of the center position in the TSS region: | 129110504 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | X78706 KJ901354 BT006801 CU674362 |
|---|---|
| Distance: | 0 |
| Num_trans: | 32 |
| All_trans: | X78706:0 KJ901354:0 BT006801:0 CU674362:0 ENST00000681689.1:-36 ENST00000455830.2:-163 ENST00000455396.2:-172 ENST00000681118.1:-174 AK313931:-193 ENST00000679520.1:-201 ENST00000681911.1:-201 ENST00000415948.6:-201 ENST00000393384.3:-202 BC000723:-221 ENST00000681627.1:-228 ENST00000681622.1:-238 ENST00000680093.1:-242 ENST00000441796.1:-260 ENST00000681040.1:-273 ENST00000458362.5:-273 ENST00000680523.1:-282 ENST00000681325.1:-282 ENST00000680117.1:-282 ENST00000681725.1:-282 ENST00000318080.7:-284 NM_001346546:-284 NM_004003:-284 NM_000755:-284 NM_001346549:-284 NM_001346548:-284 NM_001257363:-284 NM_001346547:-284 |
TATA-Box annotation
| Distance to TSS: | 289 |
|---|---|
| Nearest PromoterID: | NM_001346549 |
| Entrez ID: | 1384 |
| Nearest Unigene: | Hs.12068 |
| Nearest Refseq: | NM_000755 |
| Nearest Ensembl: | ENSG00000095321 |
| Gene Name: | carnitine O-acetyltransferase |
| Gene Alias: | CAT|CAT1|NBIA8 |
| Gene Description: | carnitine O-acetyltransferase |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
