Difference between revisions of "TSS:Hg 102730.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|CAT1= | |CAT1= | ||
| − | |all_trans=KJ901354:22 BT006801:22 CU674362:22 X78706:27 ENST00000455830.2:-135 | + | |all_trans=ENST00000681689.1:-8 KJ901354:22 BT006801:22 CU674362:22 X78706:27 ENST00000455830.2:-135 ENST00000455396.2:-144 ENST00000681118.1:-146 AK313931:-165 ENST00000679520.1:-173 ENST00000681911.1:-173 ENST00000415948.6:-173 ENST00000393384.3:-174 BC000723:-193 ENST00000681627.1:-200 ENST00000681622.1:-210 ENST00000680093.1:-214 ENST00000441796.1:-232 ENST00000681040.1:-245 ENST00000458362.5:-245 ENST00000680523.1:-254 ENST00000681325.1:-254 ENST00000680117.1:-254 ENST00000681725.1:-254 ENST00000318080.7:-256 NM_001346546:-256 NM_004003:-256 NM_000755:-256 NM_001346549:-256 NM_001346548:-256 NM_001257363:-256 NM_001346547:-256 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| − | |distance= | + | |distance=-8 |
| − | |distance_to_tss= | + | |distance_to_tss=259 |
|end=129110537 | |end=129110537 | ||
|end_of_center_position=129110534 | |end_of_center_position=129110534 | ||
|entrez_id=1384 | |entrez_id=1384 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
| − | |gene_alias=CAT | + | |gene_alias=CAT{{!}}CAT1{{!}}NBIA8 |
|gene_description=carnitine O-acetyltransferase | |gene_description=carnitine O-acetyltransferase | ||
|gene_id=1384 | |gene_id=1384 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:2342 | |hgnc_mgi_id=HGNC:2342 | ||
|nearest_ensembl=ENSG00000095321 | |nearest_ensembl=ENSG00000095321 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001346549 |
|nearest_refseq=NM_000755 | |nearest_refseq=NM_000755 | ||
|nearest_unigene=Hs.12068 | |nearest_unigene=Hs.12068 | ||
| − | |num_trans= | + | |num_trans=32 |
|species=human | |species=human | ||
|start=129110530 | |start=129110530 | ||
|start_of_center_position=129110533 | |start_of_center_position=129110533 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000681689.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102730.1 | |tss_id=hg_102730.1 | ||
Revision as of 17:10, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 129110533 |
|---|---|
| End of the center position in the TSS region: | 129110534 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000681689.1 |
|---|---|
| Distance: | -8 |
| Num_trans: | 32 |
| All_trans: | ENST00000681689.1:-8 KJ901354:22 BT006801:22 CU674362:22 X78706:27 ENST00000455830.2:-135 ENST00000455396.2:-144 ENST00000681118.1:-146 AK313931:-165 ENST00000679520.1:-173 ENST00000681911.1:-173 ENST00000415948.6:-173 ENST00000393384.3:-174 BC000723:-193 ENST00000681627.1:-200 ENST00000681622.1:-210 ENST00000680093.1:-214 ENST00000441796.1:-232 ENST00000681040.1:-245 ENST00000458362.5:-245 ENST00000680523.1:-254 ENST00000681325.1:-254 ENST00000680117.1:-254 ENST00000681725.1:-254 ENST00000318080.7:-256 NM_001346546:-256 NM_004003:-256 NM_000755:-256 NM_001346549:-256 NM_001346548:-256 NM_001257363:-256 NM_001346547:-256 |
TATA-Box annotation
| Distance to TSS: | 259 |
|---|---|
| Nearest PromoterID: | NM_001346549 |
| Entrez ID: | 1384 |
| Nearest Unigene: | Hs.12068 |
| Nearest Refseq: | NM_000755 |
| Nearest Ensembl: | ENSG00000095321 |
| Gene Name: | carnitine O-acetyltransferase |
| Gene Alias: | CAT|CAT1|NBIA8 |
| Gene Description: | carnitine O-acetyltransferase |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
