Difference between revisions of "TSS:Hg 102768.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.055 |distance_to_tss=586 |entrez_id=51759 |gc_percent=0.527363 |gene_alias=HCA59|HSPC220|bA409K20.3 |gene_description=chromosome 9 open reading fram...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |HSPC220= | ||
| + | |all_trans=LF370363:-30 MA605940:-30 ENST00000461762.5:156 AK097577:156 LF346690:-480 MA582267:-480 LF207946:-497 MA443523:-497 | ||
| + | |bA409K20.3= | ||
| + | |chr=chr9 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| − | |distance_to_tss= | + | |distance=-30 |
| + | |distance_to_tss=568 | ||
| + | |end=129834711 | ||
| + | |end_of_center_position=129834707 | ||
|entrez_id=51759 | |entrez_id=51759 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
| − | |gene_alias=HCA59 | + | |gene_alias=CSU2{{!}}HCA59{{!}}HSPC220{{!}}bA409K20.3 |
|gene_description=chromosome 9 open reading frame 78 | |gene_description=chromosome 9 open reading frame 78 | ||
| + | |gene_id=51759 | ||
|gene_name=C9orf78 | |gene_name=C9orf78 | ||
| + | |gene_source=HGNC:24932 | ||
| + | |gene_symbol=C9orf78 | ||
| + | |gene_synonyms=HCA59 HSPC220 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:24932 | ||
|nearest_ensembl=ENSG00000136819 | |nearest_ensembl=ENSG00000136819 | ||
|nearest_promoter_id=NM_016520 | |nearest_promoter_id=NM_016520 | ||
|nearest_refseq=NM_016520 | |nearest_refseq=NM_016520 | ||
|nearest_unigene=Hs.278429 | |nearest_unigene=Hs.278429 | ||
| − | |tata_box= | + | |num_trans=8 |
| + | |species=human | ||
| + | |start=129834702 | ||
| + | |start_of_center_position=129834706 | ||
| + | |strand=- | ||
| + | |tata_box=-69(CTTTTTAAAGAT,+,0.00) | ||
| + | |transcript_name=LF370363 MA605940 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102768.1 | |tss_id=hg_102768.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 17:11, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 129834706 |
|---|---|
| End of the center position in the TSS region: | 129834707 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF370363 MA605940 |
|---|---|
| Distance: | -30 |
| Num_trans: | 8 |
| All_trans: | LF370363:-30 MA605940:-30 ENST00000461762.5:156 AK097577:156 LF346690:-480 MA582267:-480 LF207946:-497 MA443523:-497 |
TATA-Box annotation
| Distance to TSS: | 568 |
|---|---|
| Nearest PromoterID: | NM_016520 |
| Entrez ID: | 51759 |
| Nearest Unigene: | Hs.278429 |
| Nearest Refseq: | NM_016520 |
| Nearest Ensembl: | ENSG00000136819 |
| Gene Name: | C9orf78 |
| Gene Alias: | CSU2|HCA59|HSPC220|bA409K20.3 |
| Gene Description: | chromosome 9 open reading frame 78 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -69(CTTTTTAAAGAT,+,0.00) |
