Difference between revisions of "TSS:Hg 102769.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|HSPC220= | |HSPC220= | ||
| − | |all_trans=AF218421:0 BC017570:0 BC007664:0 ENST00000461349.5 | + | |all_trans=AF218421:0 BC017570:0 BC007664:0 ENST00000461349.5:-5 KJ893985:11 KJ906186:11 CU675747:11 CU676010:11 LF207946:25 MA443523:25 ENST00000372447.7:-26 NM_016520:-26 AK057004:-26 ENST00000492991.5:-32 AF151054:-32 LF346690:42 MA582267:42 LF383687:-44 MA619264:-44 LF370363:492 MA605940:492 |
|bA409K20.3= | |bA409K20.3= | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=34 |
|end=129835249 | |end=129835249 | ||
|end_of_center_position=129835241 | |end_of_center_position=129835241 | ||
|entrez_id=51759 | |entrez_id=51759 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
| − | |gene_alias=HCA59 | + | |gene_alias=CSU2{{!}}HCA59{{!}}HSPC220{{!}}bA409K20.3 |
|gene_description=chromosome 9 open reading frame 78 | |gene_description=chromosome 9 open reading frame 78 | ||
|gene_id=51759 | |gene_id=51759 | ||
| Line 17: | Line 17: | ||
|gene_source=HGNC:24932 | |gene_source=HGNC:24932 | ||
|gene_symbol=C9orf78 | |gene_symbol=C9orf78 | ||
| − | |gene_synonyms=HCA59 HSPC220 | + | |gene_synonyms=CSU2 HCA59 HSPC220 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:24932 | |hgnc_mgi_id=HGNC:24932 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_016520 | |nearest_refseq=NM_016520 | ||
|nearest_unigene=Hs.278429 | |nearest_unigene=Hs.278429 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=human | |species=human | ||
|start=129835232 | |start=129835232 | ||
Revision as of 17:11, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 129835240 |
|---|---|
| End of the center position in the TSS region: | 129835241 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AF218421 BC017570 BC007664 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | AF218421:0 BC017570:0 BC007664:0 ENST00000461349.5:-5 KJ893985:11 KJ906186:11 CU675747:11 CU676010:11 LF207946:25 MA443523:25 ENST00000372447.7:-26 NM_016520:-26 AK057004:-26 ENST00000492991.5:-32 AF151054:-32 LF346690:42 MA582267:42 LF383687:-44 MA619264:-44 LF370363:492 MA605940:492 |
TATA-Box annotation
| Distance to TSS: | 34 |
|---|---|
| Nearest PromoterID: | NM_016520 |
| Entrez ID: | 51759 |
| Nearest Unigene: | Hs.278429 |
| Nearest Refseq: | NM_016520 |
| Nearest Ensembl: | ENSG00000136819 |
| Gene Name: | chromosome 9 open reading frame 78 |
| Gene Alias: | CSU2|HCA59|HSPC220|bA409K20.3 |
| Gene Description: | chromosome 9 open reading frame 78 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
