Difference between revisions of "TSS:Hg 102770.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|HSPC220= | |HSPC220= | ||
| − | |all_trans=ENST00000372447.7 | + | |all_trans=ENST00000372447.7:0 ENST00000461349.5:0 ENST00000492991.5:0 NM_016520:0 LF383687:0 MA619264:0 AK057004:0 AF151054:0 BC017570:4 BC007664:5 AF218421:8 KJ893985:29 KJ906186:29 CU675747:29 CU676010:29 LF207946:43 MA443523:43 LF346690:60 MA582267:60 |
|bA409K20.3= | |bA409K20.3= | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=2 |
|end=129835296 | |end=129835296 | ||
|end_of_center_position=129835274 | |end_of_center_position=129835274 | ||
|entrez_id=51759 | |entrez_id=51759 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
| − | |gene_alias=HCA59 | + | |gene_alias=CSU2{{!}}HCA59{{!}}HSPC220{{!}}bA409K20.3 |
|gene_description=chromosome 9 open reading frame 78 | |gene_description=chromosome 9 open reading frame 78 | ||
|gene_id=51759 | |gene_id=51759 | ||
| Line 17: | Line 17: | ||
|gene_source=HGNC:24932 | |gene_source=HGNC:24932 | ||
|gene_symbol=C9orf78 | |gene_symbol=C9orf78 | ||
| − | |gene_synonyms=HCA59 HSPC220 | + | |gene_synonyms=CSU2 HCA59 HSPC220 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:24932 | |hgnc_mgi_id=HGNC:24932 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_016520 | |nearest_refseq=NM_016520 | ||
|nearest_unigene=Hs.278429 | |nearest_unigene=Hs.278429 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=human | |species=human | ||
|start=129835250 | |start=129835250 | ||
|start_of_center_position=129835273 | |start_of_center_position=129835273 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000372447.7 | + | |transcript_name=ENST00000372447.7 ENST00000461349.5 ENST00000492991.5 NM_016520 LF383687 MA619264 AK057004 AF151054 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102770.1 | |tss_id=hg_102770.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q9NZ63 Q9P0Q6 |
}} | }} | ||
Revision as of 17:11, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 129835273 |
|---|---|
| End of the center position in the TSS region: | 129835274 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000372447.7 ENST00000461349.5 ENST00000492991.5 NM_016520 LF383687 MA619264 AK057004 AF151054 |
|---|---|
| Distance: | 0 |
| Num_trans: | 19 |
| All_trans: | ENST00000372447.7:0 ENST00000461349.5:0 ENST00000492991.5:0 NM_016520:0 LF383687:0 MA619264:0 AK057004:0 AF151054:0 BC017570:4 BC007664:5 AF218421:8 KJ893985:29 KJ906186:29 CU675747:29 CU676010:29 LF207946:43 MA443523:43 LF346690:60 MA582267:60 |
TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NM_016520 |
| Entrez ID: | 51759 |
| Nearest Unigene: | Hs.278429 |
| Nearest Refseq: | NM_016520 |
| Nearest Ensembl: | ENSG00000136819 |
| Gene Name: | chromosome 9 open reading frame 78 |
| Gene Alias: | CSU2|HCA59|HSPC220|bA409K20.3 |
| Gene Description: | chromosome 9 open reading frame 78 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
