Difference between revisions of "TSS:Hg 102825.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.06 |distance_to_tss=565 |entrez_id=286336 |gc_percent=0.626866 |gene_alias=C9orf59 |gene_description=family with sequence similarity 78 member A |ge...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=KJ904173:-158 CU690620:-159 BC152842:-217 BC156765:-217 AB528860:-217 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| − | |distance_to_tss= | + | |distance=-158 |
| + | |distance_to_tss=556 | ||
| + | |end=131275962 | ||
| + | |end_of_center_position=131275954 | ||
|entrez_id=286336 | |entrez_id=286336 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NM_033387 | |nearest_refseq=NM_033387 | ||
|nearest_unigene=Hs.143878 | |nearest_unigene=Hs.143878 | ||
| + | |num_trans=5 | ||
| + | |species=human | ||
| + | |start=131275945 | ||
| + | |start_of_center_position=131275953 | ||
| + | |strand=- | ||
| + | |transcript_name=KJ904173 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102825.1 | |tss_id=hg_102825.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:12, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 131275953 |
|---|---|
| End of the center position in the TSS region: | 131275954 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | KJ904173 |
|---|---|
| Distance: | -158 |
| Num_trans: | 5 |
| All_trans: | KJ904173:-158 CU690620:-159 BC152842:-217 BC156765:-217 AB528860:-217 |
TATA-Box annotation
| Distance to TSS: | 556 |
|---|---|
| Nearest PromoterID: | NM_033387 |
| Entrez ID: | 286336 |
| Nearest Unigene: | Hs.143878 |
| Nearest Refseq: | NM_033387 |
| Nearest Ensembl: | ENSG00000126882 |
| Gene Name: | FAM78A |
| Gene Alias: | C9orf59 |
| Gene Description: | family with sequence similarity 78 member A |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
