Difference between revisions of "TSS:Hg 10286.1"
From referenceTSS
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|SPS1= | |SPS1= | ||
|SRML1= | |SRML1= | ||
| − | |all_trans=ENST00000487300 | + | |all_trans=LF357384:155 MA592961:155 ENST00000487300.1:-164 KJ897602:-422 EU831469:-423 EU831556:-423 BC033106:-444 BC000309:-478 ENST00000376957.7:-496 NM_003132:-496 ENST00000459997.1:-498 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| − | |distance= | + | |distance=155 |
| − | |distance_to_tss= | + | |distance_to_tss=516 |
|end=11059522 | |end=11059522 | ||
| + | |end_of_center_position=11059503 | ||
|entrez_id=6723 | |entrez_id=6723 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| − | |gene_alias=PAPT | + | |gene_alias=PAPT{{!}}SPDSY{{!}}SPS1{{!}}SRML1 |
|gene_description=spermidine synthase | |gene_description=spermidine synthase | ||
|gene_id=6723 | |gene_id=6723 | ||
| − | |gene_name= | + | |gene_name=SRM |
|gene_source=HGNC:11296 | |gene_source=HGNC:11296 | ||
|gene_symbol=SRM | |gene_symbol=SRM | ||
| Line 24: | Line 25: | ||
|nearest_refseq=NM_003132 | |nearest_refseq=NM_003132 | ||
|nearest_unigene=Hs.76244 | |nearest_unigene=Hs.76244 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=11059482 | |start=11059482 | ||
| + | |start_of_center_position=11059502 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF357384 MA592961 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10286.1 | |tss_id=hg_10286.1 | ||
Latest revision as of 17:13, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 11059502 |
|---|---|
| End of the center position in the TSS region: | 11059503 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | LF357384 MA592961 |
|---|---|
| Distance: | 155 |
| Num_trans: | 11 |
| All_trans: | LF357384:155 MA592961:155 ENST00000487300.1:-164 KJ897602:-422 EU831469:-423 EU831556:-423 BC033106:-444 BC000309:-478 ENST00000376957.7:-496 NM_003132:-496 ENST00000459997.1:-498 |
TATA-Box annotation
| Distance to TSS: | 516 |
|---|---|
| Nearest PromoterID: | NM_003132 |
| Entrez ID: | 6723 |
| Nearest Unigene: | Hs.76244 |
| Nearest Refseq: | NM_003132 |
| Nearest Ensembl: | ENSG00000116649 |
| Gene Name: | SRM |
| Gene Alias: | PAPT|SPDSY|SPS1|SRML1 |
| Gene Description: | spermidine synthase |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
