Difference between revisions of "TSS:Hg 10286.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.085 |distance_to_tss=532 |entrez_id=6723 |gc_percent=0.721393 |gene_alias=PAPT|SPDSY|SPS1|SRML1 |gene_description=spermidine synthase |gene_name=SRM...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |SPDSY= | ||
| + | |SPS1= | ||
| + | |SRML1= | ||
| + | |all_trans=LF357384:155 MA592961:155 ENST00000487300.1:-164 KJ897602:-422 EU831469:-423 EU831556:-423 BC033106:-444 BC000309:-478 ENST00000376957.7:-496 NM_003132:-496 ENST00000459997.1:-498 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| − | |distance_to_tss= | + | |distance=155 |
| + | |distance_to_tss=516 | ||
| + | |end=11059522 | ||
| + | |end_of_center_position=11059503 | ||
|entrez_id=6723 | |entrez_id=6723 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| − | |gene_alias=PAPT | + | |gene_alias=PAPT{{!}}SPDSY{{!}}SPS1{{!}}SRML1 |
|gene_description=spermidine synthase | |gene_description=spermidine synthase | ||
| + | |gene_id=6723 | ||
|gene_name=SRM | |gene_name=SRM | ||
| + | |gene_source=HGNC:11296 | ||
| + | |gene_symbol=SRM | ||
| + | |gene_synonyms=SPS1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11296 | ||
|nearest_ensembl=ENSG00000116649 | |nearest_ensembl=ENSG00000116649 | ||
|nearest_promoter_id=NM_003132 | |nearest_promoter_id=NM_003132 | ||
|nearest_refseq=NM_003132 | |nearest_refseq=NM_003132 | ||
|nearest_unigene=Hs.76244 | |nearest_unigene=Hs.76244 | ||
| + | |num_trans=11 | ||
| + | |species=human | ||
| + | |start=11059482 | ||
| + | |start_of_center_position=11059502 | ||
| + | |strand=- | ||
| + | |transcript_name=LF357384 MA592961 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10286.1 | |tss_id=hg_10286.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=K7ESL0 | ||
}} | }} | ||
Latest revision as of 17:13, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 11059502 |
|---|---|
| End of the center position in the TSS region: | 11059503 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF357384 MA592961 |
|---|---|
| Distance: | 155 |
| Num_trans: | 11 |
| All_trans: | LF357384:155 MA592961:155 ENST00000487300.1:-164 KJ897602:-422 EU831469:-423 EU831556:-423 BC033106:-444 BC000309:-478 ENST00000376957.7:-496 NM_003132:-496 ENST00000459997.1:-498 |
TATA-Box annotation
| Distance to TSS: | 516 |
|---|---|
| Nearest PromoterID: | NM_003132 |
| Entrez ID: | 6723 |
| Nearest Unigene: | Hs.76244 |
| Nearest Refseq: | NM_003132 |
| Nearest Ensembl: | ENSG00000116649 |
| Gene Name: | SRM |
| Gene Alias: | PAPT|SPDSY|SPS1|SRML1 |
| Gene Description: | spermidine synthase |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
