Difference between revisions of "TSS:Hg 10288.1"
From referenceTSS
| Line 3: | Line 3: | ||
|SPS1= | |SPS1= | ||
|SRML1= | |SRML1= | ||
| − | |all_trans=ENST00000376957. | + | |all_trans=ENST00000376957.7:0 ENST00000459997.1:0 NM_003132:0 LF206727:0 MA442304:0 M34338:0 BC000309:1 BC033106:35 EU831469:56 EU831556:56 KJ897602:57 ENST00000487300.1:315 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.18 | |cpg_percent=0.18 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-21 |
|end=11060078 | |end=11060078 | ||
|end_of_center_position=11060040 | |end_of_center_position=11060040 | ||
|entrez_id=6723 | |entrez_id=6723 | ||
|gc_percent=0.825871 | |gc_percent=0.825871 | ||
| − | |gene_alias=PAPT | + | |gene_alias=PAPT{{!}}SPDSY{{!}}SPS1{{!}}SRML1 |
|gene_description=spermidine synthase | |gene_description=spermidine synthase | ||
|gene_id=6723 | |gene_id=6723 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_003132 | |nearest_refseq=NM_003132 | ||
|nearest_unigene=Hs.76244 | |nearest_unigene=Hs.76244 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=11060000 | |start=11060000 | ||
|start_of_center_position=11060039 | |start_of_center_position=11060039 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000376957. | + | |transcript_name=ENST00000376957.7 ENST00000459997.1 NM_003132 LF206727 MA442304 M34338 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10288.1 | |tss_id=hg_10288.1 | ||
Revision as of 17:13, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11060039 |
|---|---|
| End of the center position in the TSS region: | 11060040 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000376957.7 ENST00000459997.1 NM_003132 LF206727 MA442304 M34338 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | ENST00000376957.7:0 ENST00000459997.1:0 NM_003132:0 LF206727:0 MA442304:0 M34338:0 BC000309:1 BC033106:35 EU831469:56 EU831556:56 KJ897602:57 ENST00000487300.1:315 |
TATA-Box annotation
| Distance to TSS: | -21 |
|---|---|
| Nearest PromoterID: | NM_003132 |
| Entrez ID: | 6723 |
| Nearest Unigene: | Hs.76244 |
| Nearest Refseq: | NM_003132 |
| Nearest Ensembl: | ENSG00000116649 |
| Gene Name: | spermidine synthase |
| Gene Alias: | PAPT|SPDSY|SPS1|SRML1 |
| Gene Description: | spermidine synthase |
| Gene Type: | protein-coding |
| CpG%: | 0.18 |
| GC%: | 0.825871 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
