Difference between revisions of "TSS:Hg 102895.1"
From referenceTSS
| Line 2: | Line 2: | ||
|AOA2= | |AOA2= | ||
|SCAR1= | |SCAR1= | ||
| − | |all_trans=ENST00000224140. | + | |all_trans=ENST00000224140.6:34 NM_015046:34 NM_001351528:34 BX538166:35 BX537849:51 AK307608:51 NM_001351527:164 AK125448:164 |
|bA479K20.2= | |bA479K20.2= | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| − | |distance= | + | |distance=34 |
| − | |distance_to_tss=- | + | |distance_to_tss=-39 |
|end=132355030 | |end=132355030 | ||
|end_of_center_position=132355025 | |end_of_center_position=132355025 | ||
|entrez_id=23064 | |entrez_id=23064 | ||
|gc_percent=0.751244 | |gc_percent=0.751244 | ||
| − | |gene_alias=ALS4 | + | |gene_alias=ALS4{{!}}AOA2{{!}}SCAN2{{!}}SCAR1{{!}}Sen1{{!}}bA479K20.2 |
|gene_description=senataxin | |gene_description=senataxin | ||
|gene_id=23064 | |gene_id=23064 | ||
| Line 18: | Line 18: | ||
|gene_source=HGNC:445 | |gene_source=HGNC:445 | ||
|gene_symbol=SETX | |gene_symbol=SETX | ||
| − | |gene_synonyms=AOA2 KIAA0625 | + | |gene_synonyms=AOA2 KIAA0625 Sen1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:445 | |hgnc_mgi_id=HGNC:445 | ||
|nearest_ensembl=ENSG00000107290 | |nearest_ensembl=ENSG00000107290 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001351528 |
|nearest_refseq=NM_015046 | |nearest_refseq=NM_015046 | ||
|nearest_unigene=Hs.460317 | |nearest_unigene=Hs.460317 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=132355019 | |start=132355019 | ||
|start_of_center_position=132355024 | |start_of_center_position=132355024 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000224140. | + | |transcript_name=ENST00000224140.6 NM_015046 NM_001351528 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102895.1 | |tss_id=hg_102895.1 | ||
Revision as of 17:14, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 132355024 |
|---|---|
| End of the center position in the TSS region: | 132355025 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000224140.6 NM_015046 NM_001351528 |
|---|---|
| Distance: | 34 |
| Num_trans: | 8 |
| All_trans: | ENST00000224140.6:34 NM_015046:34 NM_001351528:34 BX538166:35 BX537849:51 AK307608:51 NM_001351527:164 AK125448:164 |
TATA-Box annotation
| Distance to TSS: | -39 |
|---|---|
| Nearest PromoterID: | NM_001351528 |
| Entrez ID: | 23064 |
| Nearest Unigene: | Hs.460317 |
| Nearest Refseq: | NM_015046 |
| Nearest Ensembl: | ENSG00000107290 |
| Gene Name: | senataxin |
| Gene Alias: | ALS4|AOA2|SCAN2|SCAR1|Sen1|bA479K20.2 |
| Gene Description: | senataxin |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.751244 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
