Difference between revisions of "TSS:Hg 102906.1"
From referenceTSS
| Line 5: | Line 5: | ||
|TFIIIC90= | |TFIIIC90= | ||
|TFIIICDELTA= | |TFIIICDELTA= | ||
| − | |all_trans=AK027002:0 AK225350:0 AK225121:13 AK304715:-25 ENST00000438527.7 | + | |all_trans=NM_001322341:0 NR_136309:0 AK027002:0 AK225350:0 AK225121:13 AK304715:-25 ENST00000438527.7:-36 BC012726:-36 BC156832:-258 ENST00000372159.7:-410 ENST00000372153.5:-410 ENST00000310532.6:-410 ENST00000480876.2:-410 ENST00000482620.1:-410 NM_022779:-410 NM_001322340:-410 NM_138620:-410 NM_001322344:-410 AF427339:-410 AF335568:-410 AF335569:-410 AK027484:-410 AF335567:-410 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=3 |
|end=132669991 | |end=132669991 | ||
|end_of_center_position=132669981 | |end_of_center_position=132669981 | ||
| − | |entrez_id= | + | |entrez_id=64794 |
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
| − | |gene_alias= | + | |gene_alias=PPP1R25 |
| − | |gene_description= | + | |gene_description=DEAD-box helicase 31 |
|gene_id=64794 | |gene_id=64794 | ||
|gene_name=DEAD-box helicase 31 | |gene_name=DEAD-box helicase 31 | ||
| Line 23: | Line 23: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:16715 | |hgnc_mgi_id=HGNC:16715 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000125485 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001322341 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_022779 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.660767 |
| − | |num_trans= | + | |num_trans=23 |
|species=human | |species=human | ||
|start=132669969 | |start=132669969 | ||
|start_of_center_position=132669980 | |start_of_center_position=132669980 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=AK027002 AK225350 | + | |transcript_name=NM_001322341 NR_136309 AK027002 AK225350 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102906.1 | |tss_id=hg_102906.1 | ||
Revision as of 17:14, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 132669980 |
|---|---|
| End of the center position in the TSS region: | 132669981 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001322341 NR_136309 AK027002 AK225350 |
|---|---|
| Distance: | 0 |
| Num_trans: | 23 |
| All_trans: | NM_001322341:0 NR_136309:0 AK027002:0 AK225350:0 AK225121:13 AK304715:-25 ENST00000438527.7:-36 BC012726:-36 BC156832:-258 ENST00000372159.7:-410 ENST00000372153.5:-410 ENST00000310532.6:-410 ENST00000480876.2:-410 ENST00000482620.1:-410 NM_022779:-410 NM_001322340:-410 NM_138620:-410 NM_001322344:-410 AF427339:-410 AF335568:-410 AF335569:-410 AK027484:-410 AF335567:-410 |
TATA-Box annotation
| Distance to TSS: | 3 |
|---|---|
| Nearest PromoterID: | NM_001322341 |
| Entrez ID: | 64794 |
| Nearest Unigene: | Hs.660767 |
| Nearest Refseq: | NM_022779 |
| Nearest Ensembl: | ENSG00000125485 |
| Gene Name: | DEAD-box helicase 31 |
| Gene Alias: | PPP1R25 |
| Gene Description: | DEAD-box helicase 31 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
