Difference between revisions of "TSS:Hg 102918.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|TSC= | |TSC= | ||
| − | |all_trans= | + | |all_trans=AB190910:0 BC121000:0 BC047772:-7 ENST00000647279.1:-9 ENST00000490179.3:-13 ENST00000643583.1:-16 ENST00000642344.1:16 ENST00000644997.1:16 ENST00000298552.9:-17 ENST00000643072.1:-17 ENST00000642745.1:-17 ENST00000647462.1:-17 ENST00000645904.1:-17 ENST00000646831.1:-17 NM_001162427:-17 NM_001362177:-17 NM_001162426:-17 NM_000368:-17 AK303030:-17 AK308412:-17 ENST00000643875.1:-18 ENST00000642627.1:-20 ENST00000642811.1:-20 ENST00000475903.6:-20 AK297326:-20 AF013168:-22 ENST00000642617.1:-24 BC108668:-24 ENST00000644255.1:-27 ENST00000647506.1:-28 ENST00000642646.1:-28 ENST00000646788.1:30 ENST00000645901.1:-32 ENST00000646625.1:-34 ENST00000646391.1:-34 ENST00000645150.1:-34 ENST00000645129.1:-34 ENST00000403810.6:-34 ENST00000643691.1:-34 AK299654:-34 BC070032:-34 ENST00000645346.1:35 ENST00000642854.1:-95 ENST00000644097.1:-170 ENST00000642249.1:-235 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=23 |
|end=132944599 | |end=132944599 | ||
|end_of_center_position=132944594 | |end_of_center_position=132944594 | ||
|entrez_id=7248 | |entrez_id=7248 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
| − | |gene_alias=LAM | + | |gene_alias=LAM{{!}}TSC |
| − | |gene_description= | + | |gene_description=TSC complex subunit 1 |
|gene_id=7248 | |gene_id=7248 | ||
| − | |gene_name= | + | |gene_name=TSC complex subunit 1 |
|gene_source=HGNC:12362 | |gene_source=HGNC:12362 | ||
|gene_symbol=TSC1 | |gene_symbol=TSC1 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:12362 | |hgnc_mgi_id=HGNC:12362 | ||
|nearest_ensembl=ENSG00000165699 | |nearest_ensembl=ENSG00000165699 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001362177 |
|nearest_refseq=NM_000368 | |nearest_refseq=NM_000368 | ||
|nearest_unigene=Hs.370854 | |nearest_unigene=Hs.370854 | ||
| − | |num_trans= | + | |num_trans=45 |
|species=human | |species=human | ||
|start=132944587 | |start=132944587 | ||
|start_of_center_position=132944593 | |start_of_center_position=132944593 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=74(TCCTTTTTATGG,-,0.00),76(CTTTTTATGGGG,+,0.00) |
| − | |transcript_name= | + | |transcript_name=AB190910 BC121000 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102918.1 | |tss_id=hg_102918.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q0VAM5 | + | |uniprot_id=Q0VAM5 |
}} | }} | ||
Revision as of 17:14, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 132944593 |
|---|---|
| End of the center position in the TSS region: | 132944594 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB190910 BC121000 |
|---|---|
| Distance: | 0 |
| Num_trans: | 45 |
| All_trans: | AB190910:0 BC121000:0 BC047772:-7 ENST00000647279.1:-9 ENST00000490179.3:-13 ENST00000643583.1:-16 ENST00000642344.1:16 ENST00000644997.1:16 ENST00000298552.9:-17 ENST00000643072.1:-17 ENST00000642745.1:-17 ENST00000647462.1:-17 ENST00000645904.1:-17 ENST00000646831.1:-17 NM_001162427:-17 NM_001362177:-17 NM_001162426:-17 NM_000368:-17 AK303030:-17 AK308412:-17 ENST00000643875.1:-18 ENST00000642627.1:-20 ENST00000642811.1:-20 ENST00000475903.6:-20 AK297326:-20 AF013168:-22 ENST00000642617.1:-24 BC108668:-24 ENST00000644255.1:-27 ENST00000647506.1:-28 ENST00000642646.1:-28 ENST00000646788.1:30 ENST00000645901.1:-32 ENST00000646625.1:-34 ENST00000646391.1:-34 ENST00000645150.1:-34 ENST00000645129.1:-34 ENST00000403810.6:-34 ENST00000643691.1:-34 AK299654:-34 BC070032:-34 ENST00000645346.1:35 ENST00000642854.1:-95 ENST00000644097.1:-170 ENST00000642249.1:-235 |
TATA-Box annotation
| Distance to TSS: | 23 |
|---|---|
| Nearest PromoterID: | NM_001362177 |
| Entrez ID: | 7248 |
| Nearest Unigene: | Hs.370854 |
| Nearest Refseq: | NM_000368 |
| Nearest Ensembl: | ENSG00000165699 |
| Gene Name: | TSC complex subunit 1 |
| Gene Alias: | LAM|TSC |
| Gene Description: | TSC complex subunit 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 74(TCCTTTTTATGG,-,0.00),76(CTTTTTATGGGG,+,0.00) |
