Difference between revisions of "TSS:Hg 102968.1"
From referenceTSS
| Line 2: | Line 2: | ||
|FS= | |FS= | ||
|UNQ2513= | |UNQ2513= | ||
| − | |all_trans=ENST00000372043.7:0 ENST00000470431.5:0 ENST00000472281.5:0 | + | |all_trans=ENST00000647146.1:0 ENST00000372040.9:0 ENST00000372043.7:0 ENST00000470431.5:0 ENST00000472281.5:0 ENST00000540636.6:0 ENST00000646215.1:0 ENST00000487864.1:0 ENST00000642916.1:0 NM_001288573:0 NM_001282632:0 NM_001288572:0 NM_001282629:0 NM_021996:0 AK293997:0 AK074639:0 AK074944:0 AK291498:0 AK303825:0 AK307687:0 AF163572:0 AK314097:0 ENST00000372038.7:3 BC032499:3 ENST00000372036.4:5 AY358175:6 ENST00000645973.1:-13 ENST00000644196.1:198 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=4 |
|end=133163920 | |end=133163920 | ||
|end_of_center_position=133163910 | |end_of_center_position=133163910 | ||
|entrez_id=26301 | |entrez_id=26301 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| − | |gene_alias=A3GALNT | + | |gene_alias=A3GALNT{{!}}FS{{!}}UNQ2513 |
| − | |gene_description= | + | |gene_description=globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) |
|gene_id=26301 | |gene_id=26301 | ||
| − | |gene_name= | + | |gene_name=globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) |
|gene_source=HGNC:20460 | |gene_source=HGNC:20460 | ||
|gene_symbol=GBGT1 | |gene_symbol=GBGT1 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:20460 | |hgnc_mgi_id=HGNC:20460 | ||
|nearest_ensembl=ENSG00000148288 | |nearest_ensembl=ENSG00000148288 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001282632 |
|nearest_refseq=NM_021996 | |nearest_refseq=NM_021996 | ||
|nearest_unigene=Hs.495419 | |nearest_unigene=Hs.495419 | ||
| − | |num_trans= | + | |num_trans=28 |
|species=human | |species=human | ||
|start=133163899 | |start=133163899 | ||
|start_of_center_position=133163909 | |start_of_center_position=133163909 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000372043.7 ENST00000470431.5 ENST00000472281.5 | + | |transcript_name=ENST00000647146.1 ENST00000372040.9 ENST00000372043.7 ENST00000470431.5 ENST00000472281.5 ENST00000540636.6 ENST00000646215.1 ENST00000487864.1 ENST00000642916.1 NM_001288573 NM_001282632 NM_001288572 NM_001282629 NM_021996 AK293997 AK074639 AK074944 AK291498 AK303825 AK307687 AF163572 AK314097 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102968.1 | |tss_id=hg_102968.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q8N5D6 | + | |uniprot_id=A0A2R8Y4A7 A0A2R8YGC1 J7PW20 J7Q0Z1 Q8N5D6 |
}} | }} | ||
Revision as of 17:16, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 133163909 |
|---|---|
| End of the center position in the TSS region: | 133163910 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000647146.1 ENST00000372040.9 ENST00000372043.7 ENST00000470431.5 ENST00000472281.5 ENST00000540636.6 ENST00000646215.1 ENST00000487864.1 ENST00000642916.1 NM_001288573 NM_001282632 NM_001288572 NM_001282629 NM_021996 AK293997 AK074639 AK074944 AK291498 AK303825 AK307687 AF163572 AK314097 |
|---|---|
| Distance: | 0 |
| Num_trans: | 28 |
| All_trans: | ENST00000647146.1:0 ENST00000372040.9:0 ENST00000372043.7:0 ENST00000470431.5:0 ENST00000472281.5:0 ENST00000540636.6:0 ENST00000646215.1:0 ENST00000487864.1:0 ENST00000642916.1:0 NM_001288573:0 NM_001282632:0 NM_001288572:0 NM_001282629:0 NM_021996:0 AK293997:0 AK074639:0 AK074944:0 AK291498:0 AK303825:0 AK307687:0 AF163572:0 AK314097:0 ENST00000372038.7:3 BC032499:3 ENST00000372036.4:5 AY358175:6 ENST00000645973.1:-13 ENST00000644196.1:198 |
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_001282632 |
| Entrez ID: | 26301 |
| Nearest Unigene: | Hs.495419 |
| Nearest Refseq: | NM_021996 |
| Nearest Ensembl: | ENSG00000148288 |
| Gene Name: | globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) |
| Gene Alias: | A3GALNT|FS|UNQ2513 |
| Gene Description: | globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
