Difference between revisions of "TSS:Hg 102988.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=5688 |entrez_id=6835 |gc_percent=0.577114 |gene_alias=SURF-2 |gene_description=surfeit 2 |gene_name=SURF2 |gene_type=protein-cod...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=LF205602:469 MA441179:469 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance_to_tss= | + | |distance=469 |
| + | |distance_to_tss=5683 | ||
| + | |end=133362238 | ||
| + | |end_of_center_position=133362233 | ||
|entrez_id=6835 | |entrez_id=6835 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
| Line 9: | Line 14: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000148291 | |nearest_ensembl=ENSG00000148291 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_017503 |
|nearest_refseq=NM_017503 | |nearest_refseq=NM_017503 | ||
|nearest_unigene=Hs.159448 | |nearest_unigene=Hs.159448 | ||
| + | |num_trans=2 | ||
| + | |species=human | ||
| + | |start=133362227 | ||
| + | |start_of_center_position=133362232 | ||
| + | |strand=- | ||
| + | |transcript_name=LF205602 MA441179 | ||
| + | |tss_classification=no | ||
|tss_id=hg_102988.1 | |tss_id=hg_102988.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:16, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 133362232 |
|---|---|
| End of the center position in the TSS region: | 133362233 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF205602 MA441179 |
|---|---|
| Distance: | 469 |
| Num_trans: | 2 |
| All_trans: | LF205602:469 MA441179:469 |
TATA-Box annotation
| Distance to TSS: | 5683 |
|---|---|
| Nearest PromoterID: | NM_017503 |
| Entrez ID: | 6835 |
| Nearest Unigene: | Hs.159448 |
| Nearest Refseq: | NM_017503 |
| Nearest Ensembl: | ENSG00000148291 |
| Gene Name: | SURF2 |
| Gene Alias: | SURF-2 |
| Gene Description: | surfeit 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
