Difference between revisions of "TSS:Hg 10299.1"
From referenceTSS
| Line 4: | Line 4: | ||
|Fbx44= | |Fbx44= | ||
|Fbxo6a= | |Fbxo6a= | ||
| − | |all_trans=BC025233:-1 BC096747:-17 AK313019:-17 BC014957:-35 AK308531:62 DQ892848:64 DQ892849:64 DQ896095:64 CR542110:66 KJ898609:66 CU692940:66 AB463629:66 ENST00000466919.1:209 | + | |all_trans=BC025233:-1 ENST00000354287.5:-15 NM_012168:-15 BC096747:-17 AK313019:-17 BC014957:-35 AK308531:62 DQ892848:64 DQ892849:64 DQ896095:64 CR542110:66 KJ898609:66 CU692940:66 AB463629:66 ENST00000466919.1:209 AF187318:-268 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.17 | |cpg_percent=0.17 | ||
|distance=-1 | |distance=-1 | ||
| − | |distance_to_tss= | + | |distance_to_tss=3 |
|end=11654414 | |end=11654414 | ||
|end_of_center_position=11654410 | |end_of_center_position=11654410 | ||
|entrez_id=93611 | |entrez_id=93611 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
| − | |gene_alias=FBG3 | + | |gene_alias=FBG3{{!}}FBX30{{!}}FBX6A{{!}}Fbx44{{!}}Fbxo6a |
|gene_description=F-box protein 44 | |gene_description=F-box protein 44 | ||
|gene_id=26232 | |gene_id=26232 | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:13581 | |hgnc_mgi_id=HGNC:13581 | ||
|nearest_ensembl=ENSG00000132879 | |nearest_ensembl=ENSG00000132879 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_183412 |
|nearest_refseq=NM_033182 | |nearest_refseq=NM_033182 | ||
|nearest_unigene=Hs.556006 | |nearest_unigene=Hs.556006 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=11654405 | |start=11654405 | ||
|start_of_center_position=11654409 | |start_of_center_position=11654409 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-53(GGCCTTTAAGAG,-,0.00),-52(GCCTTTAAGAGG,-,0.00),-51(CCTTTAAGAGGC,+,0.00) |
|transcript_name=BC025233 | |transcript_name=BC025233 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 17:16, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11654409 |
|---|---|
| End of the center position in the TSS region: | 11654410 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC025233 |
|---|---|
| Distance: | -1 |
| Num_trans: | 16 |
| All_trans: | BC025233:-1 ENST00000354287.5:-15 NM_012168:-15 BC096747:-17 AK313019:-17 BC014957:-35 AK308531:62 DQ892848:64 DQ892849:64 DQ896095:64 CR542110:66 KJ898609:66 CU692940:66 AB463629:66 ENST00000466919.1:209 AF187318:-268 |
TATA-Box annotation
| Distance to TSS: | 3 |
|---|---|
| Nearest PromoterID: | NM_183412 |
| Entrez ID: | 93611 |
| Nearest Unigene: | Hs.556006 |
| Nearest Refseq: | NM_033182 |
| Nearest Ensembl: | ENSG00000132879 |
| Gene Name: | F-box protein 2 |
| Gene Alias: | FBG3|FBX30|FBX6A|Fbx44|Fbxo6a |
| Gene Description: | F-box protein 44 |
| Gene Type: | protein-coding |
| CpG%: | 0.17 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -53(GGCCTTTAAGAG,-,0.00),-52(GCCTTTAAGAGG,-,0.00),-51(CCTTTAAGAGGC,+,0.00) |
