Difference between revisions of "TSS:Hg 10305.1"
From referenceTSS
| Line 3: | Line 3: | ||
|POLZ2= | |POLZ2= | ||
|REV7= | |REV7= | ||
| − | |all_trans=ENST00000376692. | + | |all_trans=AF157482:125 ENST00000376692.9:191 NM_006341:191 ENST00000456915.1:208 AF139365:209 AK027327:212 ENST00000376669.9:221 ENST00000445656.5:228 ENST00000376664.10:228 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=125 | |distance=125 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-203 |
|end=11681364 | |end=11681364 | ||
|end_of_center_position=11681352 | |end_of_center_position=11681352 | ||
|entrez_id=10459 | |entrez_id=10459 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
| − | |gene_alias=FANCV | + | |gene_alias=FANCV{{!}}MAD2B{{!}}POLZ2{{!}}REV7 |
| − | |gene_description= | + | |gene_description=mitotic arrest deficient 2 like 2 |
|gene_id=10459 | |gene_id=10459 | ||
| − | |gene_name= | + | |gene_name=mitotic arrest deficient 2 like 2 |
|gene_source=HGNC:6764 | |gene_source=HGNC:6764 | ||
|gene_symbol=MAD2L2 | |gene_symbol=MAD2L2 | ||
| − | |gene_synonyms=MAD2B POLZ2 REV7 | + | |gene_synonyms=FANCV MAD2B POLZ2 REV7 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:6764 | |hgnc_mgi_id=HGNC:6764 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_006341 | |nearest_refseq=NM_006341 | ||
|nearest_unigene=Hs.19400 | |nearest_unigene=Hs.19400 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=11681338 | |start=11681338 | ||
|start_of_center_position=11681351 | |start_of_center_position=11681351 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=AF157482 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10305.1 | |tss_id=hg_10305.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 17:18, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11681351 |
|---|---|
| End of the center position in the TSS region: | 11681352 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AF157482 |
|---|---|
| Distance: | 125 |
| Num_trans: | 9 |
| All_trans: | AF157482:125 ENST00000376692.9:191 NM_006341:191 ENST00000456915.1:208 AF139365:209 AK027327:212 ENST00000376669.9:221 ENST00000445656.5:228 ENST00000376664.10:228 |
TATA-Box annotation
| Distance to TSS: | -203 |
|---|---|
| Nearest PromoterID: | NM_006341 |
| Entrez ID: | 10459 |
| Nearest Unigene: | Hs.19400 |
| Nearest Refseq: | NM_006341 |
| Nearest Ensembl: | ENSG00000116670 |
| Gene Name: | mitotic arrest deficient 2 like 2 |
| Gene Alias: | FANCV|MAD2B|POLZ2|REV7 |
| Gene Description: | mitotic arrest deficient 2 like 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
