Difference between revisions of "TSS:Hg 103054.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.025 |distance_to_tss=-7460 |entrez_id=100151684 |gc_percent=0.547264 |gene_alias=RNU6ATAC1|U6ATAC |gene_description="RNA, U6atac small nuclear (U12-...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |U6ATAC= | ||
| + | |chr=chr9 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| + | |distance=NA | ||
|distance_to_tss=-7460 | |distance_to_tss=-7460 | ||
| + | |end=134172030 | ||
| + | |end_of_center_position=134172024 | ||
|entrez_id=100151684 | |entrez_id=100151684 | ||
|gc_percent=0.547264 | |gc_percent=0.547264 | ||
| − | |gene_alias=RNU6ATAC1 | + | |gene_alias=RNU6ATAC1{{!}}U6ATAC |
| − | |gene_description= | + | |gene_description=RNA, U6atac small nuclear (U12-dependent splicing) |
|gene_name=RNU6ATAC | |gene_name=RNU6ATAC | ||
|gene_type=snRNA | |gene_type=snRNA | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NR_023344 | |nearest_refseq=NR_023344 | ||
|nearest_unigene=Hs.545589 | |nearest_unigene=Hs.545589 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=134172017 | ||
| + | |start_of_center_position=134172023 | ||
| + | |strand=- | ||
| + | |tata_box=41(CCTTATCTGGAC,+,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_103054.1 | |tss_id=hg_103054.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:18, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 134172023 |
|---|---|
| End of the center position in the TSS region: | 134172024 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -7460 |
|---|---|
| Nearest PromoterID: | NR_023344 |
| Entrez ID: | 100151684 |
| Nearest Unigene: | Hs.545589 |
| Nearest Refseq: | NR_023344 |
| Nearest Ensembl: | ENSG00000221676 |
| Gene Name: | RNU6ATAC |
| Gene Alias: | RNU6ATAC1|U6ATAC |
| Gene Description: | RNA, U6atac small nuclear (U12-dependent splicing) |
| Gene Type: | snRNA |
| CpG%: | 0.025 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 41(CCTTATCTGGAC,+,0.00) |
