Difference between revisions of "TSS:Hg 103098.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 5: | Line 5: | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=5035 |
|end=135526480 | |end=135526480 | ||
| + | |end_of_center_position=135526476 | ||
|entrez_id=3933 | |entrez_id=3933 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
| − | |gene_alias=PMFA | + | |gene_alias=PMFA{{!}}TLC{{!}}TP{{!}}VEGP |
|gene_description=lipocalin 1 | |gene_description=lipocalin 1 | ||
|gene_name=LCN1 | |gene_name=LCN1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000160349 | |nearest_ensembl=ENSG00000160349 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001252619 |
|nearest_refseq=NM_002297 | |nearest_refseq=NM_002297 | ||
|nearest_unigene=Hs.530311 | |nearest_unigene=Hs.530311 | ||
| Line 21: | Line 22: | ||
|species=human | |species=human | ||
|start=135526470 | |start=135526470 | ||
| + | |start_of_center_position=135526475 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-46(CTCTTTATGGAG,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 17:19, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 135526475 |
|---|---|
| End of the center position in the TSS region: | 135526476 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 5035 |
|---|---|
| Nearest PromoterID: | NM_001252619 |
| Entrez ID: | 3933 |
| Nearest Unigene: | Hs.530311 |
| Nearest Refseq: | NM_002297 |
| Nearest Ensembl: | ENSG00000160349 |
| Gene Name: | LCN1 |
| Gene Alias: | PMFA|TLC|TP|VEGP |
| Gene Description: | lipocalin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -46(CTCTTTATGGAG,+,0.00) |
