Difference between revisions of "TSS:Hg 103100.1"
From referenceTSS
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|SPATA27= | |SPATA27= | ||
|TEB2= | |TEB2= | ||
| − | |all_trans=KJ900742:-203 AY884306:-208 | + | |all_trans=KJ900742:-203 AY884306:-208 ENST00000425225.2:-216 NM_001101677:-216 NM_001012415:-216 ENST00000298466.9:-263 AY902244:-263 BC031861:-263 |
|bA100C15.3= | |bA100C15.3= | ||
|bHLHe80= | |bHLHe80= | ||
| Line 9: | Line 9: | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
|distance=-203 | |distance=-203 | ||
| − | |distance_to_tss= | + | |distance_to_tss=233 |
|end=135699265 | |end=135699265 | ||
| + | |end_of_center_position=135699249 | ||
|entrez_id=402381 | |entrez_id=402381 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
| − | |gene_alias=C9orf157 | + | |gene_alias=C9orf157{{!}}NOHLH{{!}}ODG5{{!}}SPATA27{{!}}SPGF32{{!}}TEB2{{!}}bA100C15.3{{!}}bHLHe80 |
|gene_description=spermatogenesis and oogenesis specific basic helix-loop-helix 1 | |gene_description=spermatogenesis and oogenesis specific basic helix-loop-helix 1 | ||
|gene_name=SOHLH1 | |gene_name=SOHLH1 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_001012415 | |nearest_refseq=NM_001012415 | ||
|nearest_unigene=Hs.120464 | |nearest_unigene=Hs.120464 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=135699231 | |start=135699231 | ||
| + | |start_of_center_position=135699248 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=75(CCTTTTCTGGGG,+,0.00) |
|transcript_name=KJ900742 | |transcript_name=KJ900742 | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 17:19, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 135699248 |
|---|---|
| End of the center position in the TSS region: | 135699249 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | KJ900742 |
|---|---|
| Distance: | -203 |
| Num_trans: | 8 |
| All_trans: | KJ900742:-203 AY884306:-208 ENST00000425225.2:-216 NM_001101677:-216 NM_001012415:-216 ENST00000298466.9:-263 AY902244:-263 BC031861:-263 |
TATA-Box annotation
| Distance to TSS: | 233 |
|---|---|
| Nearest PromoterID: | NM_001012415 |
| Entrez ID: | 402381 |
| Nearest Unigene: | Hs.120464 |
| Nearest Refseq: | NM_001012415 |
| Nearest Ensembl: | ENSG00000165643 |
| Gene Name: | SOHLH1 |
| Gene Alias: | C9orf157|NOHLH|ODG5|SPATA27|SPGF32|TEB2|bA100C15.3|bHLHe80 |
| Gene Description: | spermatogenesis and oogenesis specific basic helix-loop-helix 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 75(CCTTTTCTGGGG,+,0.00) |
