Difference between revisions of "TSS:Hg 103130.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |LIM3= | ||
| + | |M2-LHX3= | ||
| + | |all_trans=AB593129:76 AB593131:90 AB593130:114 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| − | |distance_to_tss= | + | |distance=76 |
| + | |distance_to_tss=7949 | ||
| + | |end=136193738 | ||
| + | |end_of_center_position=136193725 | ||
|entrez_id=8022 | |entrez_id=8022 | ||
|gc_percent=0.776119 | |gc_percent=0.776119 | ||
| − | |gene_alias=CPHD3 | + | |gene_alias=CPHD3{{!}}LIM3{{!}}M2-LHX3 |
|gene_description=LIM homeobox 3 | |gene_description=LIM homeobox 3 | ||
| + | |gene_id=100652835 | ||
|gene_name=LHX3 | |gene_name=LHX3 | ||
| + | |gene_source=EntrezGene:100652835 | ||
| + | |gene_symbol=RBSG2 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id= | ||
|nearest_ensembl=ENSG00000107187 | |nearest_ensembl=ENSG00000107187 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001363746 |
|nearest_refseq=NM_014564 | |nearest_refseq=NM_014564 | ||
|nearest_unigene=Hs.148427 | |nearest_unigene=Hs.148427 | ||
| − | |tata_box= | + | |num_trans=3 |
| + | |species=human | ||
| + | |start=136193711 | ||
| + | |start_of_center_position=136193724 | ||
| + | |strand=- | ||
| + | |tata_box=-40(CCTTTTAGGCGC,+,0.00) | ||
| + | |transcript_name=AB593129 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103130.1 | |tss_id=hg_103130.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 17:19, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 136193724 |
|---|---|
| End of the center position in the TSS region: | 136193725 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB593129 |
|---|---|
| Distance: | 76 |
| Num_trans: | 3 |
| All_trans: | AB593129:76 AB593131:90 AB593130:114 |
TATA-Box annotation
| Distance to TSS: | 7949 |
|---|---|
| Nearest PromoterID: | NM_001363746 |
| Entrez ID: | 8022 |
| Nearest Unigene: | Hs.148427 |
| Nearest Refseq: | NM_014564 |
| Nearest Ensembl: | ENSG00000107187 |
| Gene Name: | LHX3 |
| Gene Alias: | CPHD3|LIM3|M2-LHX3 |
| Gene Description: | LIM homeobox 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.776119 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -40(CCTTTTAGGCGC,+,0.00) |
