Difference between revisions of "TSS:Hg 103140.1"
From referenceTSS
| Line 2: | Line 2: | ||
|LIM3= | |LIM3= | ||
|M2-LHX3= | |M2-LHX3= | ||
| − | |all_trans=NM_178138:0 AB593067:0 AB593063:0 AB593062:0 | + | |all_trans=ENST00000371748.10:0 NM_178138:0 AB593067:0 AB593063:0 AB593062:0 AF156888:14 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=0 |
|end=136205133 | |end=136205133 | ||
|end_of_center_position=136205128 | |end_of_center_position=136205128 | ||
|entrez_id=8022 | |entrez_id=8022 | ||
|gc_percent=0.791045 | |gc_percent=0.791045 | ||
| − | |gene_alias=CPHD3 | + | |gene_alias=CPHD3{{!}}LIM3{{!}}M2-LHX3 |
|gene_description=LIM homeobox 3 | |gene_description=LIM homeobox 3 | ||
|gene_id=8022 | |gene_id=8022 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_014564 | |nearest_refseq=NM_014564 | ||
|nearest_unigene=Hs.148427 | |nearest_unigene=Hs.148427 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=136205122 | |start=136205122 | ||
|start_of_center_position=136205127 | |start_of_center_position=136205127 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_178138 AB593067 AB593063 AB593062 | + | |transcript_name=ENST00000371748.10 NM_178138 AB593067 AB593063 AB593062 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103140.1 | |tss_id=hg_103140.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q9UBR4 | + | |uniprot_id=F1T0D5 Q9UBR4 |
}} | }} | ||
Revision as of 17:20, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 136205127 |
|---|---|
| End of the center position in the TSS region: | 136205128 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000371748.10 NM_178138 AB593067 AB593063 AB593062 |
|---|---|
| Distance: | 0 |
| Num_trans: | 6 |
| All_trans: | ENST00000371748.10:0 NM_178138:0 AB593067:0 AB593063:0 AB593062:0 AF156888:14 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_178138 |
| Entrez ID: | 8022 |
| Nearest Unigene: | Hs.148427 |
| Nearest Refseq: | NM_014564 |
| Nearest Ensembl: | ENSG00000107187 |
| Gene Name: | LIM homeobox 3 |
| Gene Alias: | CPHD3|LIM3|M2-LHX3 |
| Gene Description: | LIM homeobox 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.791045 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
