Difference between revisions of "TSS:Hg 103152.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AF311287:-22 AK292081:-24 ENST00000481053.5:-35 | + | |all_trans=AF311287:-22 AK292081:-24 ENST00000481053.5:-35 ENST00000641290.1:-35 BC070091:-35 AK295647:-35 ENST00000556340.1:-37 AK309043:-37 BC035805:-45 BC008877:-47 ENST00000489932.2:-50 AK024001:-50 ENST00000371732.10:-60 NM_052814:-60 NM_052813:-60 ENST00000371734.7:-72 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
|distance=-22 | |distance=-22 | ||
| − | |distance_to_tss= | + | |distance_to_tss=70 |
|end=136373609 | |end=136373609 | ||
|end_of_center_position=136373599 | |end_of_center_position=136373599 | ||
|entrez_id=64170 | |entrez_id=64170 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=CANDF2 | + | |gene_alias=CANDF2{{!}}hCARD9 |
|gene_description=caspase recruitment domain family member 9 | |gene_description=caspase recruitment domain family member 9 | ||
|gene_id=64170 | |gene_id=64170 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:16391 | |hgnc_mgi_id=HGNC:16391 | ||
|nearest_ensembl=ENSG00000187796 | |nearest_ensembl=ENSG00000187796 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_052814 |
|nearest_refseq=NM_052813 | |nearest_refseq=NM_052813 | ||
|nearest_unigene=Hs.694071 | |nearest_unigene=Hs.694071 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=136373588 | |start=136373588 | ||
Revision as of 17:20, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 136373598 |
|---|---|
| End of the center position in the TSS region: | 136373599 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AF311287 |
|---|---|
| Distance: | -22 |
| Num_trans: | 16 |
| All_trans: | AF311287:-22 AK292081:-24 ENST00000481053.5:-35 ENST00000641290.1:-35 BC070091:-35 AK295647:-35 ENST00000556340.1:-37 AK309043:-37 BC035805:-45 BC008877:-47 ENST00000489932.2:-50 AK024001:-50 ENST00000371732.10:-60 NM_052814:-60 NM_052813:-60 ENST00000371734.7:-72 |
TATA-Box annotation
| Distance to TSS: | 70 |
|---|---|
| Nearest PromoterID: | NM_052814 |
| Entrez ID: | 64170 |
| Nearest Unigene: | Hs.694071 |
| Nearest Refseq: | NM_052813 |
| Nearest Ensembl: | ENSG00000187796 |
| Gene Name: | caspase recruitment domain family member 9 |
| Gene Alias: | CANDF2|hCARD9 |
| Gene Description: | caspase recruitment domain family member 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
