Difference between revisions of "TSS:Hg 103153.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000481053.5:0 ENST00000489932.2:0 ENST00000556340.1:0 | + | |all_trans=ENST00000481053.5:0 ENST00000371732.10:0 ENST00000489932.2:0 ENST00000556340.1:0 ENST00000641290.1:0 NM_052814:0 NM_052813:0 BC070091:0 AF311287:0 BC035805:0 BC008877:0 AK292081:0 AK024001:0 AK295647:0 AK309043:0 ENST00000371734.7:-4 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=22 |
|end=136373677 | |end=136373677 | ||
|end_of_center_position=136373647 | |end_of_center_position=136373647 | ||
|entrez_id=64170 | |entrez_id=64170 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
| − | |gene_alias=CANDF2 | + | |gene_alias=CANDF2{{!}}hCARD9 |
|gene_description=caspase recruitment domain family member 9 | |gene_description=caspase recruitment domain family member 9 | ||
|gene_id=64170 | |gene_id=64170 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:16391 | |hgnc_mgi_id=HGNC:16391 | ||
|nearest_ensembl=ENSG00000187796 | |nearest_ensembl=ENSG00000187796 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_052814 |
|nearest_refseq=NM_052813 | |nearest_refseq=NM_052813 | ||
|nearest_unigene=Hs.694071 | |nearest_unigene=Hs.694071 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=136373616 | |start=136373616 | ||
|start_of_center_position=136373646 | |start_of_center_position=136373646 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000481053.5 ENST00000489932.2 ENST00000556340.1 | + | |transcript_name=ENST00000481053.5 ENST00000371732.10 ENST00000489932.2 ENST00000556340.1 ENST00000641290.1 NM_052814 NM_052813 BC070091 AF311287 BC035805 BC008877 AK292081 AK024001 AK295647 AK309043 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103153.1 | |tss_id=hg_103153.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A024R8I4 B4DIK5 Q9H257 | + | |uniprot_id=A0A024R8F1 A0A024R8I4 A0A286YFD5 B4DIK5 Q9H257 |
}} | }} | ||
Revision as of 17:20, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 136373646 |
|---|---|
| End of the center position in the TSS region: | 136373647 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000481053.5 ENST00000371732.10 ENST00000489932.2 ENST00000556340.1 ENST00000641290.1 NM_052814 NM_052813 BC070091 AF311287 BC035805 BC008877 AK292081 AK024001 AK295647 AK309043 |
|---|---|
| Distance: | 0 |
| Num_trans: | 16 |
| All_trans: | ENST00000481053.5:0 ENST00000371732.10:0 ENST00000489932.2:0 ENST00000556340.1:0 ENST00000641290.1:0 NM_052814:0 NM_052813:0 BC070091:0 AF311287:0 BC035805:0 BC008877:0 AK292081:0 AK024001:0 AK295647:0 AK309043:0 ENST00000371734.7:-4 |
TATA-Box annotation
| Distance to TSS: | 22 |
|---|---|
| Nearest PromoterID: | NM_052814 |
| Entrez ID: | 64170 |
| Nearest Unigene: | Hs.694071 |
| Nearest Refseq: | NM_052813 |
| Nearest Ensembl: | ENSG00000187796 |
| Gene Name: | caspase recruitment domain family member 9 |
| Gene Alias: | CANDF2|hCARD9 |
| Gene Description: | caspase recruitment domain family member 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
