Difference between revisions of "TSS:Hg 103179.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=FR772924:-148 | + | |all_trans=ENST00000679595.1:0 ENST00000651671.1:0 ENST00000681454.1:0 ENST00000680668.1:0 ENST00000681135.1:0 ENST00000680218.1:0 NM_017617:0 ENST00000680924.1:18 ENST00000680133.1:42 LY481191:-148 LY496063:-148 LY497906:-148 LY499411:-148 LY500814:-148 LZ239136:-148 MS869228:-148 MS869733:-148 MS880726:-148 MS996972:-148 MA806442:-148 MA823099:-148 LY616900:-148 FR772924:-148 LF159964:-148 LQ072053:-148 LY481116:-148 LY495753:-148 LY497553:-148 LY498863:-148 LY500437:-148 LZ238578:-148 MA405496:-148 MA645554:-148 MA733438:-148 MS637921:-148 MS868918:-148 MS869356:-148 MS880178:-148 MS996619:-148 MA802607:-148 MA805894:-148 MA822422:-148 LY616342:-148 MC002655:-148 LG052812:-205 LY481152:-205 LY495904:-205 LY497728:-205 LY499132:-205 LY500623:-205 LZ238842:-205 MS869069:-205 MS869542:-205 MS880447:-205 MS996794:-205 MA806172:-205 MA822759:-205 LY616606:-205 MC002680:-205 LF807178:253 LZ947776:253 AF308602:253 M73980:253 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.17 | |cpg_percent=0.17 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=2 |
|end=136546054 | |end=136546054 | ||
|end_of_center_position=136546047 | |end_of_center_position=136546047 | ||
| − | |entrez_id= | + | |entrez_id=4851 |
|gc_percent=0.845771 | |gc_percent=0.845771 | ||
| − | |gene_alias= | + | |gene_alias=AOS5{{!}}AOVD1{{!}}TAN1{{!}}hN1 |
| − | |gene_description= | + | |gene_description=notch receptor 1 |
| − | |gene_name= | + | |gene_id=4851 |
| − | |gene_type= | + | |gene_name=notch receptor 1 |
| − | |nearest_ensembl= | + | |gene_source=HGNC:7881 |
| − | |nearest_promoter_id= | + | |gene_symbol=NOTCH1 |
| − | |nearest_refseq= | + | |gene_synonyms= |
| − | |nearest_unigene= | + | |gene_type=protein-coding |
| − | |num_trans= | + | |hgnc_mgi_id=HGNC:7881 |
| + | |nearest_ensembl=ENSG00000148400 | ||
| + | |nearest_promoter_id=NM_017617 | ||
| + | |nearest_refseq=NM_017617 | ||
| + | |nearest_unigene=Hs.495473 | ||
| + | |num_trans=63 | ||
|species=human | |species=human | ||
|start=136546038 | |start=136546038 | ||
|start_of_center_position=136546046 | |start_of_center_position=136546046 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000679595.1 ENST00000651671.1 ENST00000681454.1 ENST00000680668.1 ENST00000681135.1 ENST00000680218.1 NM_017617 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103179.1 | |tss_id=hg_103179.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=P46531 | ||
}} | }} | ||
Revision as of 17:21, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 136546046 |
|---|---|
| End of the center position in the TSS region: | 136546047 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000679595.1 ENST00000651671.1 ENST00000681454.1 ENST00000680668.1 ENST00000681135.1 ENST00000680218.1 NM_017617 |
|---|---|
| Distance: | 0 |
| Num_trans: | 63 |
| All_trans: | ENST00000679595.1:0 ENST00000651671.1:0 ENST00000681454.1:0 ENST00000680668.1:0 ENST00000681135.1:0 ENST00000680218.1:0 NM_017617:0 ENST00000680924.1:18 ENST00000680133.1:42 LY481191:-148 LY496063:-148 LY497906:-148 LY499411:-148 LY500814:-148 LZ239136:-148 MS869228:-148 MS869733:-148 MS880726:-148 MS996972:-148 MA806442:-148 MA823099:-148 LY616900:-148 FR772924:-148 LF159964:-148 LQ072053:-148 LY481116:-148 LY495753:-148 LY497553:-148 LY498863:-148 LY500437:-148 LZ238578:-148 MA405496:-148 MA645554:-148 MA733438:-148 MS637921:-148 MS868918:-148 MS869356:-148 MS880178:-148 MS996619:-148 MA802607:-148 MA805894:-148 MA822422:-148 LY616342:-148 MC002655:-148 LG052812:-205 LY481152:-205 LY495904:-205 LY497728:-205 LY499132:-205 LY500623:-205 LZ238842:-205 MS869069:-205 MS869542:-205 MS880447:-205 MS996794:-205 MA806172:-205 MA822759:-205 LY616606:-205 MC002680:-205 LF807178:253 LZ947776:253 AF308602:253 M73980:253 |
TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NM_017617 |
| Entrez ID: | 4851 |
| Nearest Unigene: | Hs.495473 |
| Nearest Refseq: | NM_017617 |
| Nearest Ensembl: | ENSG00000148400 |
| Gene Name: | notch receptor 1 |
| Gene Alias: | AOS5|AOVD1|TAN1|hN1 |
| Gene Description: | notch receptor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.17 |
| GC%: | 0.845771 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
