Difference between revisions of "TSS:Hg 103203.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|UNQ643= | |UNQ643= | ||
| − | |all_trans=ENST00000341206. | + | |all_trans=ENST00000341206.9:0 NM_198946:0 BC062746:0 AF303084:0 AY358598:9 HQ257933:33 AY301269:34 GQ891284:34 KJ900325:34 ENST00000435202.5:64 BC026910:64 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=1 |
|end=136748531 | |end=136748531 | ||
|end_of_center_position=136748524 | |end_of_center_position=136748524 | ||
|entrez_id=158062 | |entrez_id=158062 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
| − | |gene_alias=LCN5 | + | |gene_alias=LCN5{{!}}UNQ643{{!}}hLcn5 |
|gene_description=lipocalin 6 | |gene_description=lipocalin 6 | ||
|gene_id=158062 | |gene_id=158062 | ||
| Line 20: | Line 20: | ||
|hLcn5= | |hLcn5= | ||
|hgnc_mgi_id=HGNC:17337 | |hgnc_mgi_id=HGNC:17337 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000267206 |
|nearest_promoter_id=NM_198946 | |nearest_promoter_id=NM_198946 | ||
|nearest_refseq=NM_198946 | |nearest_refseq=NM_198946 | ||
|nearest_unigene=Hs.522504 | |nearest_unigene=Hs.522504 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=136748516 | |start=136748516 | ||
|start_of_center_position=136748523 | |start_of_center_position=136748523 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-32(CCATATAAACGG,+,0.00) |
| − | |transcript_name=ENST00000341206. | + | |transcript_name=ENST00000341206.9 NM_198946 BC062746 AF303084 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103203.1 | |tss_id=hg_103203.1 | ||
Revision as of 17:21, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 136748523 |
|---|---|
| End of the center position in the TSS region: | 136748524 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000341206.9 NM_198946 BC062746 AF303084 |
|---|---|
| Distance: | 0 |
| Num_trans: | 11 |
| All_trans: | ENST00000341206.9:0 NM_198946:0 BC062746:0 AF303084:0 AY358598:9 HQ257933:33 AY301269:34 GQ891284:34 KJ900325:34 ENST00000435202.5:64 BC026910:64 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_198946 |
| Entrez ID: | 158062 |
| Nearest Unigene: | Hs.522504 |
| Nearest Refseq: | NM_198946 |
| Nearest Ensembl: | ENSG00000267206 |
| Gene Name: | lipocalin 6 |
| Gene Alias: | LCN5|UNQ643|hLcn5 |
| Gene Description: | lipocalin 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -32(CCATATAAACGG,+,0.00) |
