Difference between revisions of "TSS:Hg 10323.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.095 |distance_to_tss=-618 |entrez_id=1185 |gc_percent=0.681592 |gene_alias=CLC-6 |gene_description=chloride voltage-gated channel 6 |gene_name=CLCN6...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=LF357340:-31 MA592917:-31 ENST00000376592.6:63 ENST00000376585.6:63 ENST00000431243.6:63 AY046561:63 AY046562:63 AY046563:63 LF357341:103 MA592918:103 ENST00000413656.5:182 AY046565:182 BC053509:-445 ENST00000418034.1:-456 AY046564:-456 ENST00000376590.9:-484 NM_005957:-484 AK312907:-484 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| + | |distance=-31 | ||
|distance_to_tss=-618 | |distance_to_tss=-618 | ||
| + | |end=11805480 | ||
| + | |end_of_center_position=11805478 | ||
|entrez_id=1185 | |entrez_id=1185 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
|gene_alias=CLC-6 | |gene_alias=CLC-6 | ||
|gene_description=chloride voltage-gated channel 6 | |gene_description=chloride voltage-gated channel 6 | ||
| + | |gene_id=4524 | ||
|gene_name=CLCN6 | |gene_name=CLCN6 | ||
| + | |gene_source=HGNC:7436 | ||
| + | |gene_symbol=MTHFR | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:7436 | ||
|nearest_ensembl=ENSG00000011021 | |nearest_ensembl=ENSG00000011021 | ||
|nearest_promoter_id=NM_001256959 | |nearest_promoter_id=NM_001256959 | ||
|nearest_refseq=NM_001286 | |nearest_refseq=NM_001286 | ||
|nearest_unigene=Hs.193043 | |nearest_unigene=Hs.193043 | ||
| − | |tata_box= | + | |num_trans=18 |
| + | |species=human | ||
| + | |start=11805475 | ||
| + | |start_of_center_position=11805477 | ||
| + | |strand=- | ||
| + | |tata_box=-32(CCTTTTAAACCT,+,0.00) | ||
| + | |transcript_name=LF357340 MA592917 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10323.1 | |tss_id=hg_10323.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=P42898 Q5SNW7 Q8IU67 | ||
}} | }} | ||
Latest revision as of 17:22, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11805477 |
|---|---|
| End of the center position in the TSS region: | 11805478 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF357340 MA592917 |
|---|---|
| Distance: | -31 |
| Num_trans: | 18 |
| All_trans: | LF357340:-31 MA592917:-31 ENST00000376592.6:63 ENST00000376585.6:63 ENST00000431243.6:63 AY046561:63 AY046562:63 AY046563:63 LF357341:103 MA592918:103 ENST00000413656.5:182 AY046565:182 BC053509:-445 ENST00000418034.1:-456 AY046564:-456 ENST00000376590.9:-484 NM_005957:-484 AK312907:-484 |
TATA-Box annotation
| Distance to TSS: | -618 |
|---|---|
| Nearest PromoterID: | NM_001256959 |
| Entrez ID: | 1185 |
| Nearest Unigene: | Hs.193043 |
| Nearest Refseq: | NM_001286 |
| Nearest Ensembl: | ENSG00000011021 |
| Gene Name: | CLCN6 |
| Gene Alias: | CLC-6 |
| Gene Description: | chloride voltage-gated channel 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -32(CCTTTTAAACCT,+,0.00) |
