Difference between revisions of "TSS:Hg 103383.1"
From referenceTSS
| Line 2: | Line 2: | ||
|NTE-R1= | |NTE-R1= | ||
|NTEL1= | |NTEL1= | ||
| − | |all_trans=ENST00000277531.8:0 ENST00000434090.2:0 | + | |all_trans=ENST00000406427.6:0 ENST00000277531.8:0 ENST00000434090.2:0 NM_152286:0 NM_001098537:0 AK125060:0 AK126267:0 LF346307:127 MA581884:127 BC167848:164 LF346308:197 MA581885:197 LF346306:-261 MA581883:-261 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=16 |
|end=137550410 | |end=137550410 | ||
|end_of_center_position=137550387 | |end_of_center_position=137550387 | ||
|entrez_id=375775 | |entrez_id=375775 | ||
|gc_percent=0.492537 | |gc_percent=0.492537 | ||
| − | |gene_alias=C9orf111 | + | |gene_alias=C9orf111{{!}}NTE-R1{{!}}NTEL1 |
|gene_description=patatin like phospholipase domain containing 7 | |gene_description=patatin like phospholipase domain containing 7 | ||
|gene_id=375775 | |gene_id=375775 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:24768 | |hgnc_mgi_id=HGNC:24768 | ||
|nearest_ensembl=ENSG00000130653 | |nearest_ensembl=ENSG00000130653 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_152286 |
|nearest_refseq=NM_152286 | |nearest_refseq=NM_152286 | ||
|nearest_unigene=Hs.294147 | |nearest_unigene=Hs.294147 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=human | |species=human | ||
|start=137550362 | |start=137550362 | ||
|start_of_center_position=137550386 | |start_of_center_position=137550386 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000277531.8 ENST00000434090.2 | + | |transcript_name=ENST00000406427.6 ENST00000277531.8 ENST00000434090.2 NM_152286 NM_001098537 AK125060 AK126267 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103383.1 | |tss_id=hg_103383.1 | ||
Revision as of 17:25, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 137550386 |
|---|---|
| End of the center position in the TSS region: | 137550387 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000406427.6 ENST00000277531.8 ENST00000434090.2 NM_152286 NM_001098537 AK125060 AK126267 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | ENST00000406427.6:0 ENST00000277531.8:0 ENST00000434090.2:0 NM_152286:0 NM_001098537:0 AK125060:0 AK126267:0 LF346307:127 MA581884:127 BC167848:164 LF346308:197 MA581885:197 LF346306:-261 MA581883:-261 |
TATA-Box annotation
| Distance to TSS: | 16 |
|---|---|
| Nearest PromoterID: | NM_152286 |
| Entrez ID: | 375775 |
| Nearest Unigene: | Hs.294147 |
| Nearest Refseq: | NM_152286 |
| Nearest Ensembl: | ENSG00000130653 |
| Gene Name: | patatin like phospholipase domain containing 7 |
| Gene Alias: | C9orf111|NTE-R1|NTEL1 |
| Gene Description: | patatin like phospholipase domain containing 7 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.492537 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
